LOC118940452 (LOC108414267)



Basic Information


Item Value
gene id LOC118940452
gene name LOC108414267
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43341396 ~ 43342673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036949936.1
aagaaatgaaatgaatgacttttacgcaccacattttggagtggctaaatggctttacatttgtcactcaagagtgcagcaccctcaccagtcaacattgttgtgatgtgttagaaTTGGCATGTCACATTGATCCTGATAATAATAAGCATACATACTATAGTGGGTTGGACAGCAGCCATTTGTATTATGAGCCACTCTCGAATTGATTGATACATGTTTCAGTGATTTGAGTTGTCACTTTGGCGCTCCCGCCAACGTGAAAAAGTAACAAAAGTCGGAGGGAAACAGAGTAGCCTAGCCCTCGtcactctgctgcctgcctgcctgcgggcgggtgggtgggggcgggcttagggctgactgcctgtctgtctgtccctccctcactccaattGGATAAGGCCACACCGGTCCGGTGGCCAATCGATGGCTTTTGTGGCGAGGTATAAGTAAGACTCTCGAGGTGGCCAGCGGCTCATTCAGACtttctgtgacatactgaagctacCAATATGAGCGGAAGAGGCAAAACCGGAGGCAAGGCCAGGGCGAAGGCAAAGACACGTTCATCCCGTGCCGGGCTCCAGTTCCCCGTGGGCCGTGTGCACAGGCTGCTGCGTAAAGGCAACTACGCCGAGCGTGTGGGCGCTGGCGCACCAGTGTACCTGGCCGCAGTGCTCGAGTACCTGACTGCTGAGATCCTGGAGTTGGCCGGAAACGCTGCCCGTGACAACAAGAAGACTCGTATCATCCCCCGTCACCTGCAGCTGGCAGTCCGTAACGACGAGGAGCTGAACAAACTGCTTGGCGGCGTGACCATCGCGCAGGGTGGTGTTCTGCCCAACATCCAGGCAGTGCTGCTCCCCAAGAAGACTGAGAAGGTCGTCAAAGCCAAGTAAAATCGCTGGTGCGGCTGCAACTTGACTACTCaacccccaaaggctcttttaagagccaaccACCTAGCTCAACAAAAGCGCAAAGTGTCCTTTCTATGCCTGGCCAATTATTTGGCGtgttagatacacacacatatagacggcACCGTATCAAGTGCCCACATGAGGCCTAAATGAAGGATAACAACTAGTAGGCTAGAATGAGAGCATTATTGCGCGTCAAGTGTAACGTTGCTCGCGGCCCTAACAAAAGACCCAAGCGCGCCTCGGCGAGGGTGGGGGTTGCATTTTGGGGCGGCACGGAGAGGCCGAGCCTCCCGTCCAATGGGCGGCGGAGGAGGCCTCCGCAACGGGCCAATCAGGGCGGTGCGgagat

Function


NR:

description
PREDICTED: histone H2A-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0042742 defense response to bacterium biological_process
GO:0031640 killing of cells of other organism biological_process
GO:0050832 defense response to fungus biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036949936.1 True 1278 mRNA 0.54 1 43341396 43342673

Neighbor


gene id symbol gene type direction distance location
LOC118940451 NA coding upstream 7355 43333430 ~ 43334041 (+)
LOC118940144 LOC106024139 coding upstream 8434 43332315 ~ 43341386 (+)
LOC110493832 LOC107715185 coding upstream 10593 43330429 ~ 43330803 (+)
LOC118940459 NA coding upstream 11377 43319797 ~ 43330019 (+)
LOC118940518 NA coding upstream 17749 43323528 ~ 43323647 (+)
LOC118940450 LOC101068541 coding downstream 81 43342754 ~ 43343223 (+)
LOC118940456 LOC106958509 coding downstream 4717 43347390 ~ 43348641 (+)
LOC118940453 LOC107581013 coding downstream 6390 43349063 ~ 43349732 (+)
LOC110493838 LOC106565014 coding downstream 26717 43369390 ~ 43395004 (+)
LOC118940145 LOC106906734 coding downstream 77495 43420168 ~ 43421815 (+)
G1452090 NA non-coding upstream 14464 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 14698 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 20374 43320785 ~ 43321022 (+)
G1452073 NA non-coding upstream 22566 43315934 ~ 43318830 (+)
G1452364 NA non-coding downstream 154863 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 157221 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 166046 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 224728 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 256987 43599660 ~ 43599912 (+)
G1450387 NA other upstream 1450881 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1647678 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2373330 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3541160 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3914496 39342991 ~ 39426900 (+)
G1452359 NA other downstream 139587 43482260 ~ 43483693 (+)
G1452362 NA other downstream 148501 43491174 ~ 43492068 (+)
G1452399 NA other downstream 263640 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1170396 44513069 ~ 44520477 (+)

Expression



Co-expression Network