LOC118940450 (LOC101068541)


Basic Information

Item Value
gene id LOC118940450
gene name LOC101068541
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43342754 ~ 43343223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949935.1
aggaagctagctagctagcgccaTGGCCAGAACCAAGCAAACCGCTCGCAAATCCACCGGTGGCAAAGCACCCAGGAAGCAGCTCGCCACCAAGGCTGCGCGCAAGAGCGCCCCGGCCACCGGCGGCGTGAAGAAGCCTCACCGTTACAGGCCCGGCACCGTGGCTCTTAGAGAGATCCGTCGTTACCagaagtccactgagctgctgatccgcaaactgcctttccagcgcctggtgcgagaaattgcccaggactttaagaccgacctgcgcttccagagttccgcagtgatggccctgcaggaggcaagcgaggcttacctggtcggcctgttcgaggacaccaacctgtgcgccatccacgccaagagggtgaccatcatgcccaaggacatccagctggcccgtcgtattcgcggagagcgcgcataaacgatgacctgatctccaaaatcccccaaaggctctt

Function

NR:

description
histone H3-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007596 blood coagulation biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949935.1 True 470 mRNA 0.61 1 43342754 43343223

Neighbor

gene id symbol gene type direction distance location
LOC118940452 LOC108414267 coding upstream 81 43341396 ~ 43342673 (+)
LOC118940451 NA coding upstream 8713 43333430 ~ 43334041 (+)
LOC118940144 LOC106024139 coding upstream 9792 43332315 ~ 43341386 (+)
LOC110493832 LOC107715185 coding upstream 11951 43330429 ~ 43330803 (+)
LOC118940459 NA coding upstream 12735 43319797 ~ 43330019 (+)
LOC118940456 LOC106958509 coding downstream 4167 43347390 ~ 43348641 (+)
LOC118940453 LOC107581013 coding downstream 5840 43349063 ~ 43349732 (+)
LOC110493838 LOC106565014 coding downstream 26167 43369390 ~ 43395004 (+)
LOC118940145 LOC106906734 coding downstream 76945 43420168 ~ 43421815 (+)
LOC110493837 zgc:163040 coding downstream 83945 43427168 ~ 43435779 (+)
G1452090 NA non-coding upstream 15822 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 16056 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 21732 43320785 ~ 43321022 (+)
G1452073 NA non-coding upstream 23924 43315934 ~ 43318830 (+)
G1452364 NA non-coding downstream 154313 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 156671 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 165496 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 224178 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 256437 43599660 ~ 43599912 (+)
G1450387 NA other upstream 1452239 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1649036 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2374688 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3542518 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3915854 39342991 ~ 39426900 (+)
G1452359 NA other downstream 139037 43482260 ~ 43483693 (+)
G1452362 NA other downstream 147951 43491174 ~ 43492068 (+)
G1452399 NA other downstream 263090 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1169846 44513069 ~ 44520477 (+)

Expression


Co-expression Network