LOC118940456 (LOC106958509)



Basic Information


Item Value
gene id LOC118940456
gene name LOC106958509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43347390 ~ 43348641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036949940.1
TGTTGAGATCATTCAATGCAACATCTGAGGCTCTCTGGCCTATAAAGGATCCACCTCATACCACTATTTCCGTAATATAAGgctatgttattgttttttgaaaaaagtaccatacaatatttgcacatccctatcacctctgtacgcataggaaaatgatccctttattgtgtgtgtgttgggtgggtgtcTGAGGAATGTTTTACTGCATTTCAGCTTGCAGAGGTATCACCACCCGTCCCATGGCCACCTGGATCATGTCtagggaagaaaaagaagaatgacGTTATTACATGGCCTTCAAGAGCTACATGACTGCTGAGGTGACATTACGGACCCCTTAGGATTTGTGGCATTCCTTGTGTATTTGTTTCCCGTTTGTGCCACTTCGTTTCTCCTTTGTACTTGTGACACTATTTGAGGTTTTTAACGCCTATCTCTATTAGGTGTGACTGGCAACTGCAGTGGGTTGAATCCTACtagttcagtgtttcccaactccaggcaGGGGTAGAGTAGGCATTTTTGTTGAAGCCCTGGAGAGGCACAGCTGATTGAAAGAGTTGAATCAggcgcaacaacaacaacaacaagaagaacaacaccaatcaatgtgaagagtgggacatcacagttgggccttgtgttcaacatagctcagtatttgagtgTGTTTCCCGCGCATGCAAGTAGCTTTGATTTCTTCTTCCTCCATAGTTCCCTAGAACGAACGCCCTCCCCTTTGCAGCAGAGGCCAGGCAAAAGCGCGCGCTTTCTGTGCCACTGGCTTCAATCAGGTCCACCAAACGCAGATAATAAGAGCACCGAGCACCGAAAATTACGTCATTAATTCACTTGAACTCAGCTAGTGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCATTCGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGGACGCACCCTGTACGGTTTCGGCGGTTAAACGCACTCTTCTCGGAACGTCAACATCCCGACTtgaacccaaaggctcttttaagagccac

Function


NR:

description
Histone H4

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11254 H4; histone H4

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036949940.1 True 1252 mRNA 0.49 1 43347390 43348641

Neighbor


gene id symbol gene type direction distance location
LOC118940450 LOC101068541 coding upstream 4167 43342754 ~ 43343223 (+)
LOC118940452 LOC108414267 coding upstream 4717 43341396 ~ 43342673 (+)
LOC118940451 NA coding upstream 13349 43333430 ~ 43334041 (+)
LOC118940144 LOC106024139 coding upstream 14428 43332315 ~ 43341386 (+)
LOC110493832 LOC107715185 coding upstream 16587 43330429 ~ 43330803 (+)
LOC118940453 LOC107581013 coding downstream 422 43349063 ~ 43349732 (+)
LOC110493838 LOC106565014 coding downstream 20749 43369390 ~ 43395004 (+)
LOC118940145 LOC106906734 coding downstream 71527 43420168 ~ 43421815 (+)
LOC110493837 zgc:163040 coding downstream 78527 43427168 ~ 43435779 (+)
LOC118940463 LOC107745493 coding downstream 87631 43436272 ~ 43436738 (+)
G1452090 NA non-coding upstream 20458 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 20692 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 26368 43320785 ~ 43321022 (+)
G1452073 NA non-coding upstream 28560 43315934 ~ 43318830 (+)
G1452364 NA non-coding downstream 148895 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 151253 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 160078 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 218760 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 251019 43599660 ~ 43599912 (+)
G1450387 NA other upstream 1456875 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1653672 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2379324 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3547154 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3920490 39342991 ~ 39426900 (+)
G1452359 NA other downstream 133619 43482260 ~ 43483693 (+)
G1452362 NA other downstream 142533 43491174 ~ 43492068 (+)
G1452399 NA other downstream 257672 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1164428 44513069 ~ 44520477 (+)

Expression



Co-expression Network