LOC118940453 (LOC107581013)


Basic Information

Item Value
gene id LOC118940453
gene name LOC107581013
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43349063 ~ 43349732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949937.1
AGCAGGGGTGTGTCCACGGCCGGCGAATTAGCTTAGCTTCGTCTTCATAAGAGGGAAAgggctctccaccccctcattcGTTTGTGAGAAGCAGCGAGACATCAGCATCATGCCCGAGCCAGCAAAGTCCGCGCCCAAGAAGGGCTCCAAGAAAGCCGTCACCAAGACCGCAGGGAAAGGCGGCAAGAAACGCCGAAAGTCGAGGAAGGAGAGCTACGCCATTTACGTGTACAAAGTCCTGAAGCAGGTCCACCCCGATACCGGCATCTCCTCCAAGGCCATGGGAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGAGAGTCGTCTCGCCTGGCCCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTGCGCCTGCTGCTCCCCGGAGAGCTGGCCAAGCACGCAGTGTCCGAGGGCACCAAGGCCGTGACCAAGTACACCAGCTCCAAGTAAACAGCCCATTTGGAGTGCTGTAgtaacccaaaggctcttttaagagccacccaacctgtcagtgaaaaaagcaaatccatatgtgtgtgtgtgtgtgtggaggacatgtcaaaaaggggggagagggaataaaTGATGCTGACATGAACAGGGTAGGAATGTGTGCATGGCAGTATAACGCAGTGA

Function

NR:

description
PREDICTED: histone H2B-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11252 H2B; histone H2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949937.1 True 670 mRNA 0.55 1 43349063 43349732

Neighbor

gene id symbol gene type direction distance location
LOC118940456 LOC106958509 coding upstream 422 43347390 ~ 43348641 (+)
LOC118940450 LOC101068541 coding upstream 5840 43342754 ~ 43343223 (+)
LOC118940452 LOC108414267 coding upstream 6390 43341396 ~ 43342673 (+)
LOC118940451 NA coding upstream 15022 43333430 ~ 43334041 (+)
LOC118940144 LOC106024139 coding upstream 16101 43332315 ~ 43341386 (+)
LOC110493838 LOC106565014 coding downstream 19658 43369390 ~ 43395004 (+)
LOC118940145 LOC106906734 coding downstream 70436 43420168 ~ 43421815 (+)
LOC110493837 zgc:163040 coding downstream 77436 43427168 ~ 43435779 (+)
LOC118940463 LOC107745493 coding downstream 86540 43436272 ~ 43436738 (+)
LOC118940461 LOC108414267 coding downstream 89599 43439331 ~ 43441210 (+)
G1452090 NA non-coding upstream 22131 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 22365 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 28041 43320785 ~ 43321022 (+)
G1452073 NA non-coding upstream 30233 43315934 ~ 43318830 (+)
G1452364 NA non-coding downstream 147804 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 150162 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 158987 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 217669 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 249928 43599660 ~ 43599912 (+)
G1450387 NA other upstream 1458548 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1655345 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2380997 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3548827 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3922163 39342991 ~ 39426900 (+)
G1452359 NA other downstream 132528 43482260 ~ 43483693 (+)
G1452362 NA other downstream 141442 43491174 ~ 43492068 (+)
G1452399 NA other downstream 256581 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1163337 44513069 ~ 44520477 (+)

Expression


Co-expression Network