LOC110493838 (LOC106565014)


Basic Information

Item Value
gene id LOC110493838
gene name LOC106565014
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43369390 ~ 43395004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568346.2
CAGAGAACTGGAAAGTCCTGTTTTACTGTATGGGCTGGGAAAACAAATACTAACACCTTTTTTTTGCTGCTCCATTGTGGACTGAATACATAAATAGGCTGTCATTAAGTCACCAGGATACAAAATGAGCAAACCAATGTCTTCGCAAGGCATGTCCAAAATGGACAAGGCAAAGAATGTGAAGGATGAGAATAAGCTGTACTTGCACGAGGGGATCCTCTACTCTACAATCATGAGTCCCCTAGAAAATCTTAAAGGCCTGAAGGAGCTGGAGGGCAGACCCAATGACATTTTACTGGTGGCCTACCCAAAATGTGGGTTCAACTGGATGGTTGCTGTGCTACGCAAAATCATGGCTGCAGCCTCTGGGCAACAAGAACTGTCTCAAATACCTCCACTGATGGAGTTTTTCTCTCCGGACATGCAGAAGGTGGTGGGAGAAATGCCCTCTCCGCGGTTACTGGGCACACATTTGCACCCTGATAACATCCCTGGCACTTTTATTGCGAAGAAAACAAAGATGCTGGTTGTGTTCCGAAACCCAAAAGATACAGTCGTATCATACTACCACTTCATGAACACAAACCCTGTTTTGCCTAATGCCAAATCCTGGGATTCATTTTTCACAGACTTCATGGAGGGTGAAgTGGCTTGGGGCTCTTACTTCAACCATGCCCTCGCCTGGGAGAAACTAATGGACAATCCTAACATATTGATGGTCACTTATGAGCAAATGAAGGAGAATCTAGGTCAGGGGGTGCAGCAGATATCCAAGTTCTTTGATTTCCCATTGACTGAAGAGCAAGTCCAGACAATTGCAGGGCAGAGCACCTTCAATGCTATGAAGGAAAGTTCCAAGAACACCCATGGAAAACATGGCAATGTGTTTTTCCGAAAAGGTGAAGTTGGAGATTGGAAGAACCATCTAAGTGAAGCCCAAAGTAAACAGATGGATGAGAAGTTTGAGAAGCACCTGGCTCACACTAAACTGGGGGCTAAGTTAAAATATGATATTTACTGCAAGTAGGGAGTTGAAATTTCCAGATCCAATGCAGAATGAGCATATTCAGAAGATTGAAATAGAACAATGTTGCTCATGTCTACAGTAGGCCTAAACCTTCTGTAATAATACTCAAAGATACATTTATAACGCAGAGAACTAGAGATCAATGCAACTAGTTGTTTTTCAGTTCAGCATCTGTTTAGAATCTGTGTAGGGGTTCCAGTTTGGACTCATAGCTACACGTGGCAAGTTCACATTGGTCCAAACTATCTACACATTAATAAAGCCTGAAACGGGATCCTTTGTATTTGGCCAATTTTACTGCAACAAATTCTAATTGGTTATTAACCACAAGCTAGGTTTTGGTATAAACTACATCCTGTCTCTTTGTTCAATGAAGAAACAACAAGAACAGGGAAGAACGAACATCAACCATCCACTTTCCAGCATAACAACTATGATTTGTTATTTTTGAATTAATATATTTTTCTCCCCCTTATTTGTTTTGAGGGCTGTGTTGTCGAAAAATAACATAAACAGAATAACCAACCAAA

Function

NR:

description
sulfotransferase 6B1-like

GO: NA

KEGG:

id description
K22523 SULT6B1; sulfotransferase 6B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568346.2 True 1557 mRNA 0.41 7 43369390 43395004

Neighbor

gene id symbol gene type direction distance location
LOC118940453 LOC107581013 coding upstream 19658 43349063 ~ 43349732 (+)
LOC118940456 LOC106958509 coding upstream 20749 43347390 ~ 43348641 (+)
LOC118940450 LOC101068541 coding upstream 26167 43342754 ~ 43343223 (+)
LOC118940452 LOC108414267 coding upstream 26717 43341396 ~ 43342673 (+)
LOC118940451 NA coding upstream 35349 43333430 ~ 43334041 (+)
LOC118940145 LOC106906734 coding downstream 25164 43420168 ~ 43421815 (+)
LOC110493837 zgc:163040 coding downstream 32164 43427168 ~ 43435779 (+)
LOC118940463 LOC107745493 coding downstream 41268 43436272 ~ 43436738 (+)
LOC118940461 LOC108414267 coding downstream 44327 43439331 ~ 43441210 (+)
LOC118940146 LOC106906734 coding downstream 45762 43440766 ~ 43441152 (+)
LOC118940144 LOC106024139 non-coding upstream 28004 43332315 ~ 43341386 (+)
G1452090 NA non-coding upstream 42458 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 42692 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 48368 43320785 ~ 43321022 (+)
G1452073 NA non-coding upstream 50560 43315934 ~ 43318830 (+)
G1452364 NA non-coding downstream 102532 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 104890 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 113715 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 172397 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 204656 43599660 ~ 43599912 (+)
G1450387 NA other upstream 1478875 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1675672 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2401324 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3569154 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3942490 39342991 ~ 39426900 (+)
G1452359 NA other downstream 87256 43482260 ~ 43483693 (+)
G1452362 NA other downstream 96170 43491174 ~ 43492068 (+)
G1452399 NA other downstream 211309 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1118065 44513069 ~ 44520477 (+)

Expression


Co-expression Network