Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118940145 |
| gene name | LOC106906734 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 43420168 ~ 43421815 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| histone H2A |
| id | name | namespace |
|---|---|---|
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0042742 | defense response to bacterium | biological_process |
| GO:0031640 | killing of cells of other organism | biological_process |
| GO:0050832 | defense response to fungus | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| K11251 | H2A; histone H2A |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036948409.1 | True | 524 | mRNA | 0.58 | 2 | 43420168 | 43421815 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110493838 | LOC106565014 | coding | upstream | 25164 | 43369390 ~ 43395004 (+) |
| LOC118940453 | LOC107581013 | coding | upstream | 70436 | 43349063 ~ 43349732 (+) |
| LOC118940456 | LOC106958509 | coding | upstream | 71527 | 43347390 ~ 43348641 (+) |
| LOC118940450 | LOC101068541 | coding | upstream | 76945 | 43342754 ~ 43343223 (+) |
| LOC118940452 | LOC108414267 | coding | upstream | 77495 | 43341396 ~ 43342673 (+) |
| LOC110493837 | zgc:163040 | coding | downstream | 5353 | 43427168 ~ 43435779 (+) |
| LOC118940463 | LOC107745493 | coding | downstream | 14457 | 43436272 ~ 43436738 (+) |
| LOC118940461 | LOC108414267 | coding | downstream | 17516 | 43439331 ~ 43441210 (+) |
| LOC118940146 | LOC106906734 | coding | downstream | 18951 | 43440766 ~ 43441152 (+) |
| LOC118940462 | LOC103395674 | coding | downstream | 19691 | 43441506 ~ 43442036 (+) |
| LOC118940144 | LOC106024139 | non-coding | upstream | 78782 | 43332315 ~ 43341386 (+) |
| G1452090 | NA | non-coding | upstream | 93236 | 43326718 ~ 43326932 (+) |
| G1452089 | NA | non-coding | upstream | 93470 | 43326395 ~ 43326698 (+) |
| G1452087 | NA | non-coding | upstream | 99146 | 43320785 ~ 43321022 (+) |
| G1452073 | NA | non-coding | upstream | 101338 | 43315934 ~ 43318830 (+) |
| G1452364 | NA | non-coding | downstream | 75721 | 43497536 ~ 43497760 (+) |
| G1452366 | NA | non-coding | downstream | 78079 | 43499894 ~ 43517376 (+) |
| G1452369 | NA | non-coding | downstream | 86904 | 43508719 ~ 43565770 (+) |
| G1452394 | NA | non-coding | downstream | 145586 | 43567401 ~ 43574306 (+) |
| G1452398 | NA | non-coding | downstream | 177845 | 43599660 ~ 43599912 (+) |
| G1451956 | LOC106958509 | other | upstream | 10352 | 43329099 ~ 43409816 (+) |
| G1450387 | NA | other | upstream | 1529653 | 41792883 ~ 41890515 (+) |
| LOC110493897 | LOC106565282 | other | upstream | 1726450 | 41641874 ~ 41706180 (+) |
| LOC110493893 | cdh22 | other | upstream | 2452102 | 40767465 ~ 41084819 (+) |
| G1447998 | NA | other | upstream | 3619932 | 39799936 ~ 39800236 (+) |
| G1452359 | NA | other | downstream | 60445 | 43482260 ~ 43483693 (+) |
| G1452362 | NA | other | downstream | 69359 | 43491174 ~ 43492068 (+) |
| G1452399 | NA | other | downstream | 184498 | 43606313 ~ 43606781 (+) |
| G1452804 | LOC105896813 | other | downstream | 1091254 | 44513069 ~ 44520477 (+) |
