LOC118940463 (LOC107745493)


Basic Information

Item Value
gene id LOC118940463
gene name LOC107745493
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43436272 ~ 43436738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949946.1
ggaaagggctctccaccccctcattcGTTTGTGAGAAGCAGCGAGACATCAGCATCATGCCCGAGCCAGCAAAGTCCGCGCCCAAGAAGGGCTCCAAGAAAGCCGTCACCAAGACCGCAGGGAAAGGCGGCAAGAAACGCCGAAAGTCGAGGAAGGAGAGCTACGCCATTTACGTGTACAAAGTCCTGAAGCAGGTCCACCCCGATACCGGCATCTCCTCCAAGGCCATGGGAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGAGAGTCGTCTCGCCTGGCCCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTGCGCCTGCTGCTCCCCGGAGAGCTGGCCAAGCACGCAGTGTCCGAGGGCACCAAGGCCGTGACCAAGTACACCAGCTCCAAGTAAACAGCCCATTTGGAGTGCTGTAgtaacccaaaggct

Function

NR:

description
PREDICTED: histone H2B 1/2-like, partial

GO: NA

KEGG:

id description
K11252 H2B; histone H2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949946.1 True 467 mRNA 0.58 1 43436272 43436738

Neighbor

gene id symbol gene type direction distance location
LOC110493837 zgc:163040 coding upstream 493 43427168 ~ 43435779 (+)
LOC118940145 LOC106906734 coding upstream 14457 43420168 ~ 43421815 (+)
LOC110493838 LOC106565014 coding upstream 41268 43369390 ~ 43395004 (+)
LOC118940453 LOC107581013 coding upstream 86540 43349063 ~ 43349732 (+)
LOC118940456 LOC106958509 coding upstream 87631 43347390 ~ 43348641 (+)
LOC118940461 LOC108414267 coding downstream 2593 43439331 ~ 43441210 (+)
LOC118940146 LOC106906734 coding downstream 4028 43440766 ~ 43441152 (+)
LOC118940462 LOC103395674 coding downstream 4768 43441506 ~ 43442036 (+)
LOC118940465 zgc:163040 coding downstream 9183 43445921 ~ 43458256 (+)
LOC118940460 LOC108414267 coding downstream 13816 43450554 ~ 43452433 (+)
LOC118940144 LOC106024139 non-coding upstream 94886 43332315 ~ 43341386 (+)
G1452090 NA non-coding upstream 109340 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 109574 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 115250 43320785 ~ 43321022 (+)
G1452073 NA non-coding upstream 117442 43315934 ~ 43318830 (+)
G1452364 NA non-coding downstream 60798 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 63156 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 71981 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 130663 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 162922 43599660 ~ 43599912 (+)
G1451956 LOC106958509 other upstream 26456 43329099 ~ 43409816 (+)
G1450387 NA other upstream 1545757 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1742554 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2468206 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3636036 39799936 ~ 39800236 (+)
G1452359 NA other downstream 45522 43482260 ~ 43483693 (+)
G1452362 NA other downstream 54436 43491174 ~ 43492068 (+)
G1452399 NA other downstream 169575 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1076331 44513069 ~ 44520477 (+)

Expression


Co-expression Network