Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118940462 |
| gene name | LOC103395674 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 43441506 ~ 43442036 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| histone H3-like |
| id | name | namespace |
|---|---|---|
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0007596 | blood coagulation | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0030246 | carbohydrate binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| K11253 | H3; histone H3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036949945.1 | True | 531 | mRNA | 0.59 | 1 | 43441506 | 43442036 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118940461 | LOC108414267 | coding | upstream | 296 | 43439331 ~ 43441210 (+) |
| LOC118940146 | LOC106906734 | coding | upstream | 354 | 43440766 ~ 43441152 (+) |
| LOC118940463 | LOC107745493 | coding | upstream | 4768 | 43436272 ~ 43436738 (+) |
| LOC110493837 | zgc:163040 | coding | upstream | 5727 | 43427168 ~ 43435779 (+) |
| LOC118940145 | LOC106906734 | coding | upstream | 19691 | 43420168 ~ 43421815 (+) |
| LOC118940465 | zgc:163040 | coding | downstream | 3885 | 43445921 ~ 43458256 (+) |
| LOC118940460 | LOC108414267 | coding | downstream | 8518 | 43450554 ~ 43452433 (+) |
| LOC118940464 | LOC107581013 | coding | downstream | 16707 | 43458743 ~ 43459203 (+) |
| plxnb1b | LOC106565257 | coding | downstream | 497881 | 43939917 ~ 44074496 (+) |
| LOC110493929 | LOC106565256 | coding | downstream | 640260 | 43985916 ~ 44097283 (+) |
| LOC118940144 | LOC106024139 | non-coding | upstream | 100120 | 43332315 ~ 43341386 (+) |
| G1452090 | NA | non-coding | upstream | 114574 | 43326718 ~ 43326932 (+) |
| G1452089 | NA | non-coding | upstream | 114808 | 43326395 ~ 43326698 (+) |
| G1452087 | NA | non-coding | upstream | 120484 | 43320785 ~ 43321022 (+) |
| G1452073 | NA | non-coding | upstream | 122676 | 43315934 ~ 43318830 (+) |
| G1452364 | NA | non-coding | downstream | 55500 | 43497536 ~ 43497760 (+) |
| G1452366 | NA | non-coding | downstream | 57858 | 43499894 ~ 43517376 (+) |
| G1452369 | NA | non-coding | downstream | 66683 | 43508719 ~ 43565770 (+) |
| G1452394 | NA | non-coding | downstream | 125365 | 43567401 ~ 43574306 (+) |
| G1452398 | NA | non-coding | downstream | 157624 | 43599660 ~ 43599912 (+) |
| G1451956 | LOC106958509 | other | upstream | 31690 | 43329099 ~ 43409816 (+) |
| G1450387 | NA | other | upstream | 1550991 | 41792883 ~ 41890515 (+) |
| LOC110493897 | LOC106565282 | other | upstream | 1747788 | 41641874 ~ 41706180 (+) |
| LOC110493893 | cdh22 | other | upstream | 2473440 | 40767465 ~ 41084819 (+) |
| G1447998 | NA | other | upstream | 3641270 | 39799936 ~ 39800236 (+) |
| G1452359 | NA | other | downstream | 40224 | 43482260 ~ 43483693 (+) |
| G1452362 | NA | other | downstream | 49138 | 43491174 ~ 43492068 (+) |
| G1452399 | NA | other | downstream | 164277 | 43606313 ~ 43606781 (+) |
| G1452804 | LOC105896813 | other | downstream | 1071033 | 44513069 ~ 44520477 (+) |
