LOC118940465 (zgc:163040)


Basic Information

Item Value
gene id LOC118940465
gene name zgc:163040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43445921 ~ 43458256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949948.1
tgggtgggtgtctgaggaatgttttactgcgtttcagcttgcagaggtatcaccacccttcccatggccacctggatcctgtctagggaagaaaaagaagaatgacGTTATTACATGGCCTTCAAGAGCTACATGACTGCTGAGGTGACATTACGGACCCCTTATAGGGTTTGTGGCATTCCTTGTGTATTTGTTTCCCGTATGTTGCACTTCGTTTCTCCTTTGTACTTGTGACACTATTTGAGGTTTTAACGCCTATCTCTATTAGGTGTGACTGGCAACTGCAGTGGGTTGAATCCTACtagttcagtgtttcccaactccaggcaGGGGTAGAGTAGCCATTTTTTGTGGTAGCCCTGGAGAGGCACAGCTGATTGAAAGAGTTGAATcaggtgcaacaacaacaacaagtagaacaacaccaatcaatgtgaagagtgggacatcacagttgggccttgtgttcaacatagctcagtatttgagtgTGTTTCCCGCGCATGTAAGTAAGTAGCTTTGATTTCTTCTTCCTCCATTGTTCCCTAGAACGAACGCCCTGCCCTCCCCTTTGCAGCAGAGGCCAGGCAAAAGCGCGCGCTTTCTGTGCCACTGGCTTCAATCAGGTCCACCAAACGCAGATAATAAGAGCACCCGAGCACCGAAAATTACGTCATTAATTCACTTGAACTCAGCTAGCGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCTAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCATTCGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGGACGCACCCTTCCTGAAGCAGTGCATGTAAGGAAGCTAGCTAGCGCCATGGCCAGAACCAAGCAAACCGCTCGCAAATCCACCGGTGGCAAAGCACCCAGGAAGCAGCTCGCCACCAAGGCTGCGCGCAAGAGCGCCCCGGCCACCGGCGGCGTGAAGAAGCCTCACCGTTACAGGCCCGGCACCGTGGCTCTTAGAGAGATCCGTCGTTACCagaagtccactgagctgctgatccgcaaactgcctttccagcgcctggtgcgagaaattgcccaggactttaagaccgacctgcgcttccagagttccgcagtgatggccctgcaggaggcaagcgaggcttacctggtcggcctgttcgaggacaccaacctgtCTAGCGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCTAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCATTCGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGGACGCACCCTGTACGGTTTCGGCGGTTAAACGCACTCTTCTCGGAACGTCAACATCCCGACTtgaacccaaaggctcttttaagagccac

Function

symbol description
zgc:163040 Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC111221314

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949948.1 True 1757 mRNA 0.55 5 43445921 43458256

Neighbor

gene id symbol gene type direction distance location
LOC118940462 LOC103395674 coding upstream 3885 43441506 ~ 43442036 (+)
LOC118940461 LOC108414267 coding upstream 4711 43439331 ~ 43441210 (+)
LOC118940146 LOC106906734 coding upstream 4769 43440766 ~ 43441152 (+)
LOC118940463 LOC107745493 coding upstream 9183 43436272 ~ 43436738 (+)
LOC110493837 zgc:163040 coding upstream 10142 43427168 ~ 43435779 (+)
LOC118940464 LOC107581013 coding downstream 487 43458743 ~ 43459203 (+)
plxnb1b LOC106565257 coding downstream 481661 43939917 ~ 44074496 (+)
LOC110493929 LOC106565256 coding downstream 624040 43985916 ~ 44097283 (+)
setd5 LOC106565254 coding downstream 640700 44098956 ~ 44148363 (+)
mtmr14 mtmr14 coding downstream 814028 44272284 ~ 44315602 (+)
LOC118940144 LOC106024139 non-coding upstream 104535 43332315 ~ 43341386 (+)
G1452090 NA non-coding upstream 118989 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 119223 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 124899 43320785 ~ 43321022 (+)
G1452073 NA non-coding upstream 127091 43315934 ~ 43318830 (+)
G1452364 NA non-coding downstream 39280 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 41638 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 50463 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 109145 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 141404 43599660 ~ 43599912 (+)
G1451956 LOC106958509 other upstream 36105 43329099 ~ 43409816 (+)
G1450387 NA other upstream 1555406 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1752203 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2477855 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3645685 39799936 ~ 39800236 (+)
G1452359 NA other downstream 24004 43482260 ~ 43483693 (+)
G1452362 NA other downstream 32918 43491174 ~ 43492068 (+)
G1452399 NA other downstream 148057 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1054813 44513069 ~ 44520477 (+)

Expression


Co-expression Network