LOC118940460 (LOC108414267)


Basic Information

Item Value
gene id LOC118940460
gene name LOC108414267
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43450554 ~ 43452433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949943.1
GCCGAGCTGGGTGGCTTGAGTCTACATGGTTCTCATGTCGCGTTTAAGGCCAGCCCCCTGCACGGTGTGGAGCTTCAATAGCGCAGAGCAGCGTCTACAGCAAAGTACTCCTCCTCACAGACTACCGTagtgttgtaagtgtgtgtgtttaccggacCGAACGACAGACATGGCAGAAGTCGCACCAGCACCCGCCGCCGCCGCGCCGGCCAAGGCACCCAAGAAGAAGGCAGCAGCCAAGCCCAAGAAAGCGGGACCCAGCGTAGGCGAGCTCATCGTCAAGGCGGTGTCCGCCTCCAAGGAGAGGAGCGGCGTGTCCCTGGCCGCGCTCAAGAAGTCTCTGGCGGCAGGCGGCTACGACGTGGAGAAGAACAACTCCCGTGTCAAGATCGCCGTCAAGAGCCTCGTCACCAAGGGCACCCTGGTCCAGACTAAGGGCACCGGTGCTTCCGGCTCCTTCAAGATCAACAAGAAGGCCGTCGAGGCAAAGAAGCCCGCCAAGAAAGCCGCAGCCCCCAAAGCTAAGAAGGTGGCCGCCAAGAAGCCCGCCGCCGCCAAGAAGCCCAAGAAGGTAGCAGCCAAGAAGGCCGTGGCCGCAAAGAAGTCCCCCAAGAAGGCCAAGAAGCCCGCTACACCCAAAAAGGCCGCCAAGAGCCCAAAGAAGGTGAAGAAGCCCGCCGCAGCGGCCAAGAAAGCGGCCAAGAGCCCCAAGAAGGCTACCAAGGCAGCGAAGCCCAAAGCCGCCAAGCCCAAGGCGGCCAAGGCCAAGAAGGCAGCCCCCAAGAAGAAGTAAACCTATTACAAACAGTGTTCTTTCTACTCGACACATGTTGTTACCacaaaaggctcttttaagagccacccacctctttccataaaagcgcatgtcattccattccacctacctacccgtggtgcaaaataaatgaaatgaatgacttttacgcaccacattttggagtggctaaatggctttacatttgtcactcaagagtgcagcaccctcaccagtcaacattgttgtgatgtgttagaaTTGGCATGTCACATTGATCCTGATAATAATAAGCATACATACTATAGTGGGTTGGACAGCAGCCATTTGTATTATGAGCCACTCTCGAATTGATTGATACATGTTTCAGTGATTTGAGTTGTCACTTTGGCGCTCCCGCCAACGTGAAAAAGTAACAAAAGTCGGAGGGAAACAGAGTAGCCTAGCCCTCGtcactctgctgcctgcctgcctgcgggcgggtgggtgggggcgggcttagggctgactgcctgtctgtctgtccctccctcactccaattGGATAAGGCCACACCGGTCCGGTGGCCAATCGATGGCTTTTGTGGCGAGGTATAAGTAAGACTCTCGAGGTGGCCAGCGGCTCATTCAGACtttctgtgacatactgaagctacCAATATGAGCGGAAGAGGCAAAACCGGAGGCAAGGCCAGGGCGAAGGCAAAGACACGTTCATCCCGTGCCGGGCTCCAGTTCCCCGTGGGCCGTGTGCACAGGCTGCTGCGTAAAGGCAACTACGCCGAGCGTGTGGGCGCTGGCGCACCAGTGTACCTGGCCGCAGTGCTCGAGTACCTGACTGCTGAGATCCTGGAGTTGGCCGGAAACGCTGCCCGTGACAACAAGAAGACTCGTATCATCCCCCGTCACCTGCAGCTGGCAGTCCGTAACGACGAGGAGCTGAACAAACTGCTTGGCGGCGTGACCATCGCGCAGGGTGGTGTTCTGCCCAACATCCAGGCAGTGCTGCTCCCCAAGAAGACTGAGAAGGCCGTCAAAGCCAAGTAAAATCGCTGGTGCGGCTGCAACTTGACTACTCaacccccaaaggctcttttaagagcca

Function

NR:

description
histone H2A

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0042742 defense response to bacterium biological_process
GO:0031640 killing of cells of other organism biological_process
GO:0050832 defense response to fungus biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949943.1 True 1880 mRNA 0.56 1 43450554 43452433

Neighbor

gene id symbol gene type direction distance location
LOC118940462 LOC103395674 coding upstream 8518 43441506 ~ 43442036 (+)
LOC118940461 LOC108414267 coding upstream 9344 43439331 ~ 43441210 (+)
LOC118940146 LOC106906734 coding upstream 9402 43440766 ~ 43441152 (+)
LOC118940463 LOC107745493 coding upstream 13816 43436272 ~ 43436738 (+)
LOC110493837 zgc:163040 coding upstream 14775 43427168 ~ 43435779 (+)
LOC118940464 LOC107581013 coding downstream 6310 43458743 ~ 43459203 (+)
plxnb1b LOC106565257 coding downstream 487484 43939917 ~ 44074496 (+)
LOC110493929 LOC106565256 coding downstream 629863 43985916 ~ 44097283 (+)
setd5 LOC106565254 coding downstream 646523 44098956 ~ 44148363 (+)
mtmr14 mtmr14 coding downstream 819851 44272284 ~ 44315602 (+)
LOC118940144 LOC106024139 non-coding upstream 109168 43332315 ~ 43341386 (+)
G1452090 NA non-coding upstream 123622 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 123856 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 129532 43320785 ~ 43321022 (+)
G1452073 NA non-coding upstream 131724 43315934 ~ 43318830 (+)
G1452364 NA non-coding downstream 45103 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 47461 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 56286 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 114968 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 147227 43599660 ~ 43599912 (+)
G1451956 LOC106958509 other upstream 40738 43329099 ~ 43409816 (+)
G1450387 NA other upstream 1560039 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1756836 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2482488 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3650318 39799936 ~ 39800236 (+)
G1452359 NA other downstream 29827 43482260 ~ 43483693 (+)
G1452362 NA other downstream 38741 43491174 ~ 43492068 (+)
G1452399 NA other downstream 153880 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1060636 44513069 ~ 44520477 (+)

Expression


Co-expression Network