LOC118940464 (LOC107581013)


Basic Information

Item Value
gene id LOC118940464
gene name LOC107581013
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43458743 ~ 43459203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118940464
ataagagggaaagggctctccaccccctcattcGTTTGTGAGAAGCAGCGAGACATCAGCATCATGCCCGAGCCAGCAAAGTCCGCGCCCAAGAAGGGCTCCAAGAAAGCCGTCACCAAGACCGCAGGGAAAGGCGGCAAGAAACGCCGAAAGTCGAGGAAGGAGAGCTACGCCATTTACGTGTACAAAGTCCTGAAGCAGGTCCACCCCGATACCGGCATCTCCTCCAAGGCCATGGGAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGAGAGTCGTCTCGCCTGGCCCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTGCGCCTGCTGCTCCCCGGAGAGCTGGCCAAGCACGCAGTGTTCCGAGGGCACCAAGGCCGTGACCAAGTACACCAGCTCCAAGTAAACAGCCCATTTGGAGTGCTGTA

Function

NR:

description
PREDICTED: histone H2B-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118940464 True 461 mRNA 0.58 1 43458743 43459203

Neighbor

gene id symbol gene type direction distance location
LOC118940465 zgc:163040 coding upstream 487 43445921 ~ 43458256 (+)
LOC118940460 LOC108414267 coding upstream 6310 43450554 ~ 43452433 (+)
LOC118940462 LOC103395674 coding upstream 16707 43441506 ~ 43442036 (+)
LOC118940461 LOC108414267 coding upstream 17533 43439331 ~ 43441210 (+)
LOC118940146 LOC106906734 coding upstream 17591 43440766 ~ 43441152 (+)
plxnb1b LOC106565257 coding downstream 480714 43939917 ~ 44074496 (+)
LOC110493929 LOC106565256 coding downstream 623093 43985916 ~ 44097283 (+)
setd5 LOC106565254 coding downstream 639753 44098956 ~ 44148363 (+)
mtmr14 mtmr14 coding downstream 813081 44272284 ~ 44315602 (+)
LOC110493933 LOC106565248 coding downstream 865512 44324715 ~ 44545834 (+)
LOC118940144 LOC106024139 non-coding upstream 117357 43332315 ~ 43341386 (+)
G1452090 NA non-coding upstream 131811 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 132045 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 137721 43320785 ~ 43321022 (+)
G1452073 NA non-coding upstream 139913 43315934 ~ 43318830 (+)
G1452364 NA non-coding downstream 38333 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 40691 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 49516 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 108198 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 140457 43599660 ~ 43599912 (+)
G1451956 LOC106958509 other upstream 48927 43329099 ~ 43409816 (+)
G1450387 NA other upstream 1568228 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1765025 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2490677 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3658507 39799936 ~ 39800236 (+)
G1452359 NA other downstream 23057 43482260 ~ 43483693 (+)
G1452362 NA other downstream 31971 43491174 ~ 43492068 (+)
G1452399 NA other downstream 147110 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1053866 44513069 ~ 44520477 (+)

Expression


Co-expression Network