LOC110493933 (LOC106565248)


Basic Information

Item Value
gene id LOC110493933
gene name LOC106565248
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44324715 ~ 44545834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568546.2
ctatgacggtgcggtgccacgttgaaagtcattgagctcttcagtactggccattccactgccaatgtaTTCCCAAACCTGCATCCTTTTTTTGCAATAAGGTACTGAAGTAAAACTGCCCAAAAATTGGTGAAgtaattaactttatgtcctgaatacaaagcgttgtgGTTGGGGAAAATCCATGACttagtaccactcttcatattttcaagcatggtgttggctgcaTCGTGTTACGGGTATGCTATTCATTGGCAATGACTAGGGAATTTTTTTATGattaaaataaatggaatagagctaagcacagtcaaaatcctggaggaaaacctggttcagtctgctttccaacagacactaggagacaaaatcacctttcaacaggacaataatctataacacaaggccaaatatacatatAGTTGCTTACAAATGTGACATTGGATATTCCAGAGTGGCTGAGTTACCGTTCTGACTTAattcggcttgaaaatctatggcaagacttgaaaattgctgtcatgcagctcaattaaaaaaaataaaaaatgggcaaatattgtacaatccaggtgtgcaaagctctaagagacttaaccagaaagactcacaactgtaatcgctgccaaaggtgattctgacATGACATAACACTCAGGGGTGTGGATTcctatgtaaattagatatttctgtatttaatattCAATACATATGCAAAAACAAGTTTTCACTATGGGgtatgtgtgtagatgggtgaaaaatactgaatcaattttgaattcaggctgaaacaacaaaatgtggaataagtcaatggggtattaatactttctgaaggctctgtatgtgTGCTGTGCATGTATGTACTGTAATAGAATATAGGCTATGTATGTGAAATgtgtatgtaggctatgtgtatgtatttgtatgtatttatttttctggattttcttgGCATTTCACTGTCTATCTAGGGACAAGCACTGATAATTAGCGCAAGCTAATGTGTTATGGTGCAATGCATTTTACTGTTGTAAATGTATCATTGGTATTGCAGCTCTCCCTACCCAAATGATATGATCATAATATAATTCATTATATGCAATTGTACTTCTAATCCTatttgatctttttttttttaactacagTACACAGTTGAGCTGCATAGACCACACACTCCAAATGCATTTGAACTTGAAATCCAACATTCTGCTTGCAGCAACTTCCCGAAAGTCTCTGCCTCCACCTGCTGATGGATAAGTAAAAGTACGGAGCGAAGGACCTCTATATgtgcactctctcgctctctagcttTCGCTCTCTCCTCGATGAATGAAATCCACCATCGCCACACCTCCAAGCAAGGACTGTCTCGAGCGCTGCCACTTGTCTCAACCACAGGTATGCGCCTCTCACTCAACTCTGCGAAGACGTTAGTCAACAAATGCCGATACTTGGTGCTTTTATCAAAAAAATTCCCATGTGAATGAATGGAACATATTTTCAAACAAGATATCGCTCAAGAGTATTTGCTGAACATAGCTGAGAAGTTCACATTTGTGAATAACTGATTTAAAGCCTGACCATGGCGACAATTGGAGATTTCGACCCGCTCAACTCAACGGTACCTGCGACCAAGATTGAAGTTACAGTCTCGTGCAGGAACCTGCTGAATATGGACACTTTCTCCAAATCAGACCCTGTTGTAGTGTTGTACGTTCAAGGCATCGGGACAAAGGAGTGGAGAGAGTTTGGCCGAACGGAAGTGATTGAGAACACGCTGAACCCGGACTTTGTGCGGAAGTTTGTCCTGGATTTCTTCTTCGAGGAGAAGCAGAATCTTCGCTTTGATGCGTACAATGTGGACACCAGAAGTTCAAACATTTCAAAACATAAGGACTTCCTGGGCCAGATGTTCTGCACTCTGGGGGAGATCATCGGTTCCACAGGCAGTCGGCTGGAGAGAATCCTCTCtgggaTCCCAGGGAAAAAGTGTGGGAACATCATATTCACCGCTGAGGAACTGAGTAACTGCAGGGACATTGCTACCATGCAGCTGTGTGCCAACAAGCTGGACAAGAAAGACTTCTTCGGCAAGTCAGACCCATTCCTGGTCTTCTACCGCAGTAATGAAGACGgaacGTTCACCATCTGCCATAAGACGGAGGTGGTAAAGAATACTCTGAACCCTGTGTGGCAGCCCTTCACCATCCCTGTACGAGCCCTCTGTAATGGAGACTATGACAGGACAGTCAAGGTGGACGTGTATGATTGGGACAGAGATGGAAGTCATGACTTCATTGGCGAGTTCACCACCAGCTACAGAGAATTCTCCAGAGGCCAGAGCCAGTTCAACGTCTATGagGTTCTAAACCATAAAAAGAAAGGCAAGAAGAAGAAATACATCAATTCAGGGACAGTCACACTGCTGTCCTTTAAAGTGGAGTCAGAATACACGTTTGTAGACTTCATCCGGGGAGGGACGCAACTCAACTTCACAGTGGCCATCGATTTCACAGCGTCTAATGGTAACCCATCCCAGCCCACCTCTCTGCACTACATGAGTCCCTACCAGATGAATGCCTACGCAATGGCCCTGAAGGCTGTGGGGGAGATCATCCAGGATTACGACAGTGACAAGATGTTCCCTGCCTACGGCTTTGGAGCAAAGCTGCCCCCGGATGGCAAGATCTCCCATGTCTTCCCACTgAACTCCAACAGTGAGAACCCAAACTGTGTGGGTATCGAGGGAGTGTTGGAGGCCTACTTCCAGAGTCTCCGAACTGTTCAGCTCTACGGGCCCACCAACTTTGCTCCTGTCATAAACCAGGTGGCACGGTGTGCTGAGGATGTGACTGACGGATCCCAGTACTTTGTCCTTTTGATGATCACAGACGGAGTCATCTCAGACATGGTGCAGACCAAGGAGGCTGTGGTCAATGCTGCCGCTCTGCCCATGTCTATCATCATAGTGGGAGTGGGTCCTGCTGAGTTTGATGCGATGGAGGAACTGGATGGTGACGAGGTCAGAGTGTCCTCTAAGGGGCGCATTGCCGAGCGAGACATAGTCCAGTTTGTGCCTTTCCGGGACTACATAGACCGCCAGGGCAACCAGGTGCTGAGCATGGCACGGCTGGCCAAGGACGTGTTGGCAGAAATCCCTGAGCAGCTGCTGGGTTTCATGAAGACAAGAGACATCGAGCCCCGGCccgcctcctccaccaccactaccaccccgCCAGGACTCCACAAGCTGCGCATCTGAGAGAGGGGTTTGGGTGGGGGTCTTTGGTTCTTGGGTTTAGAGACATTGTTTGGACCATTTTCAGTTGCAGCAAATACctgaagagacacacactgaaGCCGTTGGGgtacacatacgcacgcacacacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacactgcagtagcGATTTCCTGCCTGGTGAACACCGCCATGCTGTGATGTAACAACTGTACAGCTTAACAAGGGTCAAATGGAGCATGACCTTTGGAGTGAGAGCTGTTGGAATTGCTTCCGTGGTTGCCAACCCCTCACTGACCCCTTAGCTTCTTTTTATATGCAGGGGTCAAGGAACAGTCACCGTTAAACGTTGTAAAAAGCAAGGGTTTGTGGGCTTCTCAACAGACAGAAAGAGCGATCGATGTTCACCTTTTTTCCTATGCCTCACTAGCCACGCATGCAATGGGTGTTTCATTCTCACATCTTTTGTGGTCCAAACAGAAACAAATTGGCCACTTGGGTTGCAATGGCAGTACTTTACTTTATCCACTCTCTGGCCaatgtatatgtccatgtgtatAATGACACTGTACAAACATTGAAGAAAGTGCGACAGCCGGTTAATATCCAAAACAAGTGAAAGGCACAGAAAGTCTATTCATGTTTGGTTTCTTCTCAGGGCATTTCTGAAAGCTTTTGGATGAGTTTCGCAAAACAAGGGAGACGGTAACAAGATGACGTCTCTGGACAGTTGAGGTCTCAGCCTCGGCATCTGGAGTCATTGGGTGTTTCTCAAAATGCATACTACCGTGCTCCGAGCACACACATTGGAGCACGGGAGGGTCATAGTATGAGTTGAAATCAAAGTATGCGAAACGGAGCACAGAGGGCACTTCTGGAATGTGTGCTCCTTTTGTACTTATTTTGAAGTATGCATCAATGCAAGCTTCAACGGAAAGTATGCAAAGAAATATGATGCAACCACGTAAAAAATGACATAAAATGTATTGAAATCAATGGTGGCCATTATTTGAGCTGAAGCGAGAGAAAATACACTCCTATTCAGAATGAAATGTTGCTtattcacatctcatatgttgcctgaCTATAATATTTTATTTTGATACGTACGTTAATAAATACAGGCGGTGTTCATTTTGCCATGTTTATCTGCCTACATACCATATATCACATGCCCATAATAGGtcaatagggctaactggctagcaactagtactgttagctagccagatagccacaAATAATTGTTAGCTAGCAACCCACAAAGAATATATCTCACATAATATTAGTTTTAGATCATTTTTGCATGTTAAAATATCTGGTTAGCTACATTATTATGCTAGCTGATAGTTATGAAGTAAAAAggttgctttgtgtatatcttgtttcGTTACTATTGCCATTGTTGACCTGACTGGAAGACGGTTCAGTGAATGGGTAAGTCCATAGTAAGtcaatagggctaactggctagctagctagccatgaaGAATTGGTAGCTACCAATgaaatatgtacagttgaagtcgggagtttacatacaccttagccaaaaacatttaaactcagtttttcacaattcctgacatttaatcctggcaACAa

Function

NR:

description
copine-9-like

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568546.2 True 4899 mRNA 0.44 20 44324715 44545834

Neighbor

gene id symbol gene type direction distance location
mtmr14 mtmr14 coding upstream 9113 44272284 ~ 44315602 (+)
setd5 LOC106565254 coding upstream 176352 44098956 ~ 44148363 (+)
LOC110493929 LOC106565256 coding upstream 227432 43985916 ~ 44097283 (+)
plxnb1b LOC106565257 coding upstream 250219 43939917 ~ 44074496 (+)
LOC118940464 LOC107581013 coding upstream 865512 43458743 ~ 43459203 (+)
si:dkey-156n14.3 LOC106565245 coding downstream 7079 44552913 ~ 44571070 (+)
LOC110493936 LOC106565244 coding downstream 56069 44601903 ~ 44615849 (+)
LOC110493938 LOC106565241 coding downstream 223642 44769476 ~ 44797689 (+)
LOC118940467 NA coding downstream 301283 44847117 ~ 44858271 (+)
LOC110493942 bin2 coding downstream 350129 44895963 ~ 44930156 (+)
G1452679 NA non-coding upstream 16268 44308221 ~ 44308447 (+)
G1452675 NA non-coding upstream 29588 44294920 ~ 44295127 (+)
G1452674 NA non-coding upstream 37854 44286589 ~ 44286861 (+)
G1452667 NA non-coding upstream 55186 44269239 ~ 44269529 (+)
G1452821 NA non-coding downstream 25415 44571249 ~ 44571912 (+)
G1452827 NA non-coding downstream 26927 44572761 ~ 44573379 (+)
G1453368 NA non-coding downstream 62841 44608675 ~ 44608890 (+)
G1453370 NA non-coding downstream 64385 44610219 ~ 44610431 (+)
G1452399 NA other upstream 717934 43606313 ~ 43606781 (+)
G1452369 NA other upstream 761014 43508719 ~ 43565770 (+)
G1452362 NA other upstream 832647 43491174 ~ 43492068 (+)
G1452359 NA other upstream 841022 43482260 ~ 43483693 (+)
G1451956 LOC106958509 other upstream 914899 43329099 ~ 43409816 (+)
G1453605 LOC106565239 other downstream 290163 44835997 ~ 44854739 (+)
G1453889 NA other downstream 504895 45050729 ~ 45051005 (+)
G1453914 NA other downstream 524137 45069971 ~ 45070925 (+)
G1454049 NA other downstream 712641 45258475 ~ 45259571 (+)
G1454127 NA other downstream 789460 45335294 ~ 45336523 (+)

Expression


Co-expression Network