LOC110493936 (LOC106565244)


Basic Information

Item Value
gene id LOC110493936
gene name LOC106565244
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44601903 ~ 44615849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568553.2
ATAGTACAACTCTGCCTCGCCGCTAGTCAGTCTGAACGGTGCTGCATGGCAAGTCTCAAGGGCAAGGCATGCATTAGAGAGAGATTCCCCAACGAATGCAAAGGAAAAGTAAATACATTGGAATTAAACAGGGATTTGTACATGCTTGATGAATAAGATATACAGTATCTGGGCTGGAAACCTTGGAATTTAAGACTTTTTCTACCCAAGCTTGTTTTATCTTGAGAGAGAACAACAGgtgttctctatctctctgcaaaGCACGACCTTGCTGTGGTGACCCATTCGTGGGTTTATTTGGTCCCAGTCTCCCGACAACAAGAGGAATAACCCTAACAAACTGCTGTATCAGAAAGACAAATTTCAACACAAAGTGGGAAACATTCTCTTGGCCCCTAGCCAGGAATGGTGGATAACTTCCTAGTGAGTGGCGAGGACACTTTTTTACCGTACGGTGGCTCCCCACCGGCATACCGCCTGTTGGACATGGTGACGGACGGGGGGACCTACCATGTGATGCCTTCGCCCTTCTCCGAGGATGACCTGAGCGAGTCGTCCAGCCCTCGCTCCTGCTCCAGCCCCGACTCCCAAGTGCTCAGTTCCAGCTATGGCAGCAGCTCCAGTGCCGAAAGCTCAGACAGCATCCTGGACCTTCTGCTGTCCCAGACCTCCCTAGGCGGGGCAGGGACCGGGGTGGCCATCCCCATGTCACTGCCCACCTTTCTGTGGGACTCACAGAGGGACGCGCCATCCCACCCTCACCCAGAGGCCTTGAAGGAGGAGAGCGTGGACTTCCCGGTCTGGTCCTTAGTGGACATGGAGGAGCCGTCCTTCCATCCCACcttagaggagatagaggagttcCTGGAGGAGAACATGGAGGTGGTGTCGTCCATGAAGCAGGAGGCCCAGGAGGGGGCGCTGGGGCCGGGCCTGGAGGAGATCTTGGGGCTGGGGGTGGGACTGGAGGTGTACAGGGAGTCCTCATCCCCAGGGCCAAGGCTGGAGCCAGAGGCCAAGCATTCAGACCAAACTGTGCCGACCGCAAATGCTGCCACCGTCACCGAGACCAAAAGCACACCCGCCACATCGTCACAGGAGTACAACGAAAGCCCGCACAACGACGTGTTCAAGAGTGGTTCATTATCCAGCAAGCCAGGATCAACACAGAGCTGTGAAAATGGTGGCAGCCCTGGAATTCCGGTCATCCTGCAGATCCAGCCCATTCAGATCAAACAGGAACCTGGTGCCactgttcctcctcctccgcctcctcccaCAGTTGTCCAGCCTCCTCCTCAGTCGGCATCGGACATAAAAATTGCCCAGCTGCTGGTCAACATCCAGGGGCATACCTTCGCCCTGGTGCCCCAGCTGCTTCCCTCCACCAGCCTCAACATCTCCTCTAAGTTTGTGCGCATCGCACCGGTGCCCATCGCGGCCAAGCCCCTGGGCCTCGGTGAGGTGGCGGTCGGGGGCCAGGGCCATGGGCTGCTGGTGGGGGGTCAGAAGTTCCAGAAGAACCCAGTGGCGGACCTTATCAAAATGCATAAATGCACTTTTCCCGGCTGCACCAAGATGTACACCAAGAGCAGCCACCTGAAGGCCCACCTGAGGAGACACACGGGGGAGAAGCCCTTTGCCTGCACCTGGCCGGGCTGTGGATGGAGaTTCTCACGGTCGGATGAGCTGTCGCGGCACCGGCGGTCCCACTCGGGGGTCAAACCCTAccagtgtccagtgtgtgagaAGAAATTTGCCCGCAGTGACCATCTATCAAAACATATCAAAGTCCATCGCTTTCCCCGAAGCCGGACGCTGCGCACAGCAAACTGACCCCATCCGGATCAATCTTCAATGGACATAGACCAAGGGAGCacggaatgtgtgtgtgagatgtgaaTATGTATGTATGTCAGAGTGTGGTATGagttatatgtatatatatatatatatatatatatatatatatatatatgagagagagattgtgtgtgccTTGCCTTTTAGAGAAATATTGTGCTATAATTTATTGTAGAAAGCAAAAACAATGAACAACCATGTGAAACCAACAAATGACACTTACCATCTTCTCATTAATCAACATACCTTGAGATTCTTGTTGCTGTTGGTGCTTTTGCATGTTGTActctttttatttgtttttatgttCAGTCTTCATCTATTTCATTAATAGGTAAGATAAGCTTTTTCATTTGAGGTGAAATGTATAATTGCTTCAGTAACAGCCTTCTATTTTACCTGGATATGACTGCCTTTTATCATGTTAAGAGCCAATGTCTTTGACATTCCTCATCTGTCAGGTTAAAGTTTTCCTGGAACTTTCTCCAAGTCAGGTTGAAGTTTCCCCAGAAACGttgtccttgttttttttcattgtcaCTCATAGCTCATTGACAGAGCGGGTAGAGAATAGTTTACTCATTCAGCACACTGTTTATGCAAAGGGAGGAGCAGAGCCTATTGTCAATTCTGTACATGAACTACTGATAACAAATAAGAACACGAATAAGCTACTGGGACTCTCAAGTTTCAGAAAAATTTCACCGGCTCAGATTCTGATACAAGGTGGGTGAAAGTAAAAGAATGGCAGAGAAAATGCAAATCGAaaagcaaaaaaagaaagaattGTGCACGGTAATGATTGTTGATTGTTTTACGTCTAAACAGGCCTTCCAGGCAGTGTTGTGTATTTTTTGGTATTTTTCGTGTAAGTGGCTCAAGCCATTTGTTAGACACTCGTCTGGCCTTAATCCACCACAGCATCCTTACCGGGGGAGAAAATAGTAATATAACAAGTTATTCATCACAGTTTTATGGAGAAATGGTGATATGGTTTGAGACAATGAGGAAAGGGAATTGAAAATGTATCACCCTTTACTCGCTCAGCATACACCTCCATTTTGCTCTCCGTTTTACAGTTGACACAAAATCTGCCTCAACTCAACAACCTGATCTGTTACTGGAATACCCACAAGCCTATGTTGGCGTGAGGTCATCATGTATGTGGATACTACTACACCACGGTGCTGAACACCCAGAAGAACTGCTTTCTGGGAACTGTAGTCACAACACTTATTTAGGCCATGACACAGTCATTACTTTTGATGTCCTGTTTTCTCTTGAAACTTGTTTGTTATGTATGCCATGCCCTGTTGTGAATATGTATGGTGAGAGAGATACCGTCCATGCAGAGTTCATGTACTGTTCGCAGATTAAAAAGCAGGGGTACACGATATTGTACATCATTCCTTTCATTCAATTTTTGAATTTTTAATGCTTGTTTAAACACAGGTGTTTTATCGCATCCTATGAATGTATGTTAATACCCCGGAGTGTACATAGCTGCATCCATGCGAAAGACACAGAAGACTATAATAACATATCTTAAGTCTGTGGTTGTGATGATTTCTAGTGGAACCCCTAAACGTGTACATAACAGAACGTTTCAGTACATATgaatatattatattttttttctttgttCTACCCAAGATGCATTTACAAATAAAAATGGAAACAATCCTGTGTA
>TU1662987
TATGACTGCCTTTTATCATGTTAAGAGCCAATGTCTTTGACATTCCTCATCTGTCAGGTTAAAGTTTTCCTGGAACTTTCTCCAAGTCAGGTTGAAGTTTCCCCAGAAACGttgtccttgttttttttcattgtcaCTCATAGCTCATTGACAGAGCGGGTAGAGAATAGTTTACTCATTCAGCACACTGTTTATGCAAAGGGAGGAGCAGAGCCTATTGTCAATTCTGTACATGAACTACTGATAACAAATAAGAACACGAATAAGCTACTGGGACTCTCAAGTTTCAGAAAAATTTCACCGGCTCAGATTCTGATACAAGGTGGGTGAAAGTAAAAGAATGGCAGAGAAAATGCAAATCGAaaagcaaaaaaagaaagaattGTGCACGGTAATGATTGTTGATTGTTTTACGTCTAAACAGGCCTTCCAGGCAGTGTTGTGTATTTTTTGGTATTTTTCGTGTAAGTGGCTCAAGCCATTTGTTAGACACTCGTCTGGCCTTAATCCACCACAGCATCCTTACCGGGGGAGAAAATAGTAATATAACAAGTTATTCATCACAGTTTTATGGAGAAATGGTGATATGGTTTGAGACAATGAGGAAAGGGAATTGAAAATGTATCACCCTTTACTCGCTCAGCATACACCTCCATTTTGCTCTCCGTTTTACAGTTGACACAAAATCTGCCTCAACTCAACAACCTGATCTGTTACTGGAATACCCACAAGCCTATGTTGGCGTGAGGTCATCATGTATGTGGATACTACTACACCACGGTGCTGAACACCCAGAAGAACTGCTTTCTGGGAACTGTAGTCACAACACTTATTTAGGCCATGACACAGTCATTACTTTTGATGTCCTGTTTTCTCTTGAAACTTGTTTGTTATGTATGCCATGCCCTGTTGTGAATATGTATGGTGAGAGAGATACCGTCCATGCAGAGTTCATGTACTGTTCGCAGATTAAAAAGCAGGGGTACACGATATTGTACATCATTCCTTTCATTCAATTTTTGAATTTTTAATGCTTGTTTAAACACAGGTGTTTTATCGCATCCTATGAATGTATGTTAATACCCCGGAGTGTACATAGCTGCATCCATGCGAAAGACACAGAAGACTATAATAACATATCTTAAGTCTGTGGTTGTGATGATTTCTAGTGGAACCCCTAAACGTGTACATAACAGAACGTTTCAGTACATATgaatatattatattttttttctttgttCTACCCAAGATGCATTTACAAATAAAAATGGAAACAATCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568553.2 False 3553 mRNA 0.47 3 44601903 44615849
TU1662987 True 1282 lncRNA 0.39 1 44614564 44615845

Neighbor

gene id symbol gene type direction distance location
si:dkey-156n14.3 LOC106565245 coding upstream 30833 44552913 ~ 44571070 (+)
LOC110493933 LOC106565248 coding upstream 56069 44324715 ~ 44545834 (+)
mtmr14 mtmr14 coding upstream 286301 44272284 ~ 44315602 (+)
setd5 LOC106565254 coding upstream 453540 44098956 ~ 44148363 (+)
LOC110493929 LOC106565256 coding upstream 504620 43985916 ~ 44097283 (+)
LOC110493938 LOC106565241 coding downstream 153627 44769476 ~ 44797689 (+)
LOC118940467 NA coding downstream 231268 44847117 ~ 44858271 (+)
LOC110493942 bin2 coding downstream 280114 44895963 ~ 44930156 (+)
LOC110493946 LOC106565237 coding downstream 353629 44969478 ~ 45029092 (+)
LOC110493947 LOC106565236 coding downstream 447833 45063682 ~ 45069411 (+)
G1452827 NA non-coding upstream 28524 44572761 ~ 44573379 (+)
G1452821 NA non-coding upstream 29991 44571249 ~ 44571912 (+)
G1452784 NA non-coding upstream 112144 44489549 ~ 44489759 (+)
G1452780 NA non-coding upstream 115347 44486317 ~ 44486556 (+)
G1453390 NA non-coding downstream 10410 44626259 ~ 44630843 (+)
G1453418 NA non-coding downstream 29385 44645234 ~ 44645461 (+)
G1453529 NA non-coding downstream 98290 44714139 ~ 44714385 (+)
G1453534 NA non-coding downstream 101696 44717545 ~ 44717836 (+)
G1453535 NA non-coding downstream 102044 44717893 ~ 44718805 (+)
G1452804 LOC105896813 other upstream 81426 44513069 ~ 44520477 (+)
G1452399 NA other upstream 995122 43606313 ~ 43606781 (+)
G1452369 NA other upstream 1038202 43508719 ~ 43565770 (+)
G1452362 NA other upstream 1109835 43491174 ~ 43492068 (+)
G1452359 NA other upstream 1118210 43482260 ~ 43483693 (+)
G1453605 LOC106565239 other downstream 220148 44835997 ~ 44854739 (+)
G1453889 NA other downstream 434880 45050729 ~ 45051005 (+)
G1453914 NA other downstream 454122 45069971 ~ 45070925 (+)
G1454049 NA other downstream 642626 45258475 ~ 45259571 (+)
G1454127 NA other downstream 719445 45335294 ~ 45336523 (+)
G1453374 NA non-coding upstream 2059 44612259 ~ 44612505 (+)
G1453373 NA non-coding upstream 2343 44611935 ~ 44612221 (+)
G1453372 NA non-coding upstream 2736 44611625 ~ 44611828 (+)
G1453370 NA non-coding upstream 4133 44610219 ~ 44610431 (+)
G1453368 NA non-coding upstream 5674 44608675 ~ 44608890 (+)

Expression


Co-expression Network