LOC110493946 (LOC106565237)


Basic Information

Item Value
gene id LOC110493946
gene name LOC106565237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44969478 ~ 45029092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568566.2
TGGGTCCTATTCAATTCACAATGAATTAATGGTCTCTGCTGGAATATGCATTAACAAACATATTACGCAGGCGAATGATGAGTTTCACACCTCGCAACATATTAAACAGTATCTAGCGATTCGATGAAAGAAAAGACGCACAAAAGAAATGGGCACTGGACGGcaatttgcaacaatttcagtaAACTCAACCCCGCGAAATCCAGGTTATTGCGCCCCGTTCGTTGTACTTACATTGGTTTTTATCCAGCAGTGCGCAACGTTTAACTTGGAAACGGAAAACCGCGTCGTCTACACTGGACCTAAGGACAGTTTTTTCGGTTATTCGGTGGATGTTTTCTACAATAATTCGTCTAGTGTCAGCATTCTGATTGGTGCTCCCAAAGCTAACACCAGCCAACCGAATGTCAACGAAGGTGGATCTGTGTACTTATGTCCCTGGAGCCAGGGCCAATCGAATTGCAGTGTCGTCCACTTTGACAATGAAGGAGATCGCCGTTTCCATGTCAATGACGTCGACGTCCAAGTGGAGTTCAAGTCCCATCAGTGGTTTGGGGCGACAGTGCGTTCCCATGGCAACACTGTCCTGGCTTGTGCCCCGAGGTACTACTGGAGAACGGAACACGCCGCCCCCTTCTCTGACGTCACAGGAACTTGCTACCTCTCCGTGGACAACctcaagacatttgtggagtacGCCCCCTGTCGCACAGAGAGACATGGTCCTGCCGGACAGGGCTACTGTCAGGGCGGGTTCAGTGCTGACTTCACCAAGGATGGGAAGATTGTTCTTGGAGGACCAGGAAGCTTTTACTGGCAAGGTCAGCTGATCTTAGCCAGCACAAAGGAAATAGTCAAGGCCTACTACCCTTCCTACTTCCTGCTCTCTGTTACCGGACAGATCCAGACCCATCAGGTGCAGGGGAGCTATGATGACAGTTACCTGGgttacTCTGTGGCCGGCGGGGAGTTCAGTGGAGATAATATTGAAGATTTCGTCACGGGAGTCCCCAAGGGACTCATGTTGTATGGTTTAGTGTCCATACTCAATGGAACAGACCTGAAATCCATGCTGAACCTCACCGGAGAACAGATGGGGTCCTATTTCGGCTACGCAGTGGCAGCCACGGACATCAACAACGACGGgaTGGAAGACCTTGTGGTGGGAGCTCCCATGTTCATGCAGAGGGGTTCCAACGGACTGCGTTGGGAGGAGGTGGGCCGTGTCTATGTGTACCTGCAGCGGCGACCCTTGCTGTTTGAACCCAGGCTGCCCCACCTGGGGGGGACCCAGGCCTTCGGGAGGTTTGGCAGCTCGCTGGCCCCACTGGGAGACCTCAACCAGGATGGCTTCAACGATATTGCCATCGGCTGTCCCTTTGGAGGAGACGACCAACAGGGATTGGTCCTCATCTATAATGGACATGCCAGTGGACTGATGGACATGCCCACTCAGACTCTAGCTGGCCAATGGGCCTCTGGCACCTTCCCCGCCAGTTTTGGCTACGCCCTCCGCGGAAATAAAGATCTGGATCATAATGGCTACCCAGATCTCATCGTAGGTGCTTTTGGGGTTGACAAGGCTGTTCTGTACAGGGCGCGGCCTATTGTCAATGCCAGTGCCTCTCTTATGCTGCAACCTACCATGATCAATCCAGAGGAGAAGAGTTGTACGGTGTCCAATGGGAATGAGACAATCTCTGTGTCCTGTGTCAACCTCAGTTTCTGCCTCTCGGCCAATGGGAAGCACCTCCCTGCTGATCTAGgttTTGTGGTGGAGGTACAGTTGGACCATCTGAAGCAGACCCAGAAGGAGTCGTCagtgaggagaactctgttcctGGATAGCCAACAGCCCAGCCTACGGAAGACCATCACCATGGCCAATGGAGGACGAACGTGTCACGACACCCGCATCTACCTGCGAAGTGAAGGGGAGTTTAGGGATAAACTTTCCCCCATTTACGTCACACTCAACTTTAGCCTGGACCCTCTCGCTTCGCTGGATCTCCATGGCCTGAGACCCATTCTAAAATACCAGACAACACACCTTATAGAGCAGAAGGCCCAGATTCAGCTGGACTGTGGTGAGGACAACATCTGTGTCCCTGACCTCAAACTGGCTGTTTATGGCGATAGGACGGAGGTGTATCTTGGTGACGATAACTCCCTGACCCTGACTTTCAATGCCAGGAACGAGGGAGAGGGCGGGGCCTACGAGGCAGAGCTTTACATGGTGCTTCCCCCTGACGCTGACTACAGTGGTATAGCCCGCAACAATGCGAGTCTGACTCAGCTAACCTGTAGCTACGAGGCAGAGAATCAGACCCGCTCTCTGGTCTGTGACCTGGGCAACCCTATGAAGTCTGGCACAAGTTTGTGGGCAGGCCTCCGCTTCACTGTGCCCCGACTGAAGGACACTTATAATACGGTGCAGTTTGAGCTCCAGATACGCAGTAAAAATGAGAATAGCTCCCAGAGCGATGTTGAGCTCTATAATCTTGAGGTGGCTGTGGTAGCTGATGTTGTCCTACAGGGCGTTTCTCGTCCGGACAagctcctcttccctcccccaaACTGGAGGATGAGCCACAGCCTCCAAGAGGGGCAGGACATTGGGTCTGAGATCCAGCATGTCTACGAGttGGTGAACAACGGGCCCAGTATGATCAGTCAGTCGGTGCTGGAGCTGCGATGCCCTCTGAGAGCTCAAGGTCACGAACTTCTGTACCCTGTGGAGATCATCACTCAGGGACCACTCAACTGCAGCTCCAACCACACCCTCAATGCACTGAAACTCAAGCTCCAGCCTCCTTCAACAGAACAGCCTCCCTCCTCACAGACGGTCAGCCCTGAACACCACATCCAGAGGAGAGAGGTCTACAGGGATCCTCTGGCCAAACAAAGCAACTTGTCATGCTCTACGGTGGAGTGCTGGAGGCTGCACTGCCATGTGGGGTTACTGGAGAGAGGAAACAGTGTCATTCTGACCGTCCGCTCACGAATCTGGGCTGAGACCTTCATCGAGAGGGCATACAAGCAGTATGTGCTGGAGTGTTCTGCCCAGTACAGAGTCAAGAACATGCCCTATGCCATCGGTCCCAAACTCAAACCCAGTGGATCCACAAAGGTCCTGACTCCAGTGATGTGGAACAAGCCGGAGAGCCAGTACATTGTACCCTTGTGGATTATCATTCTGGCCATACTGGCTGGACTGCTGCTGCTCGCCCTGCTCATATATGTACTATACAAGATGGGCTTCTTCAAAAGATCCAATCCCTATGGTACAGCCATGGAGAAAGCTCAACTCAAACCCCAGGCTTCTTCTGAGGCCTAAATGGTGGACCATCCCATCCCAGACGTCAGTTCGAAAACTGGAACTTGTACCTCCAAATGAACTACAGAATACTCATGCATGAAGGGCAGTCTTCAACTAATATCAGTAGGATGAGTACTACTTGGACCTCACTGGTATTCAGCCTGGTACTACACACTGAAATGCTCAAGCAGGCAAACACATGAGATGTCTGGCTCAAACTACAACAGAGCTATCCTGGCACGGTTGAATGGACAATAATGTCTTTAAAATCCTGCTTTTTGCTTTGGGAAAATCTCACAACAAAGTAACAACACTGGATGGGGCAATGGAGCATTCATTCAATTGTTTTATTTACCAAATACATCTttacctaaatcaaatcaaagtttattggtcatgtacacagtttggcagatgttatagtgggtgcagcgaaatgcttgtgtgactagctcctaacagtgcaGCAAAAATTTCAAACAAGTACAATTAGTTTTCTTTTATTAACTTGAAACATGAAATCACAAATGGCAGAATGAATCCAGTTGATAATCCAAATAACACTATGGATCAGTAATCCAAATGGAATCTATGCgtatacacacaaatatatactTAAGAACAATGGAGGAAAAATaacacaattgtcatacttgagtaaaagtaaaggtacTGTACCAAAACAGAAAATGACtctagtaaaagtgaaagtcacccaattAAACACTATTTGAGTAAACGTCTAAAATATTTGGTTTCACACTCCTAAGCAAACCAGACGCCACGATTTTctagtttattttatttaaggataggcaggggcacactccaacacttagacaataatttacaaacaaagcattttttttgttgtgagtcggccagatcagaggcagtatggatgaccagggattttctcttgataagtgtgtgaatt

Function

NR:

description
integrin alpha-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568566.2 True 4256 mRNA 0.49 30 44969478 45029092

Neighbor

gene id symbol gene type direction distance location
LOC110493942 bin2 coding upstream 39322 44895963 ~ 44930156 (+)
LOC118940467 NA coding upstream 111207 44847117 ~ 44858271 (+)
LOC110493938 LOC106565241 coding upstream 174538 44769476 ~ 44797689 (+)
LOC110493936 LOC106565244 coding upstream 353629 44601903 ~ 44615849 (+)
si:dkey-156n14.3 LOC106565245 coding upstream 398408 44552913 ~ 44571070 (+)
LOC110493947 LOC106565236 coding downstream 34590 45063682 ~ 45069411 (+)
LOC110493949 LOC106565235 coding downstream 50514 45079606 ~ 45087749 (+)
trnaq-uug-4 NA coding downstream 324386 45353478 ~ 45353549 (+)
LOC110493956 LOC106565228 coding downstream 489634 45518726 ~ 45526398 (+)
e3 e3 coding downstream 538162 45567254 ~ 45572753 (+)
G1453661 NA non-coding upstream 20601 44948487 ~ 44948877 (+)
G1453637 NA non-coding upstream 80837 44888391 ~ 44888641 (+)
G1453612 NA non-coding upstream 149487 44819707 ~ 44819991 (+)
G1453573 NA non-coding upstream 217352 44748104 ~ 44752126 (+)
G1453666 NA non-coding downstream 275 45029367 ~ 45029564 (+)
G1453667 NA non-coding downstream 2125 45031217 ~ 45031471 (+)
G1453879 NA non-coding downstream 13341 45042433 ~ 45042916 (+)
G1453885 NA non-coding downstream 16904 45045996 ~ 45049214 (+)
G1453913 NA non-coding downstream 58664 45087756 ~ 45091335 (+)
G1453605 LOC106565239 other upstream 114739 44835997 ~ 44854739 (+)
G1452804 LOC105896813 other upstream 449001 44513069 ~ 44520477 (+)
G1452399 NA other upstream 1362697 43606313 ~ 43606781 (+)
G1452369 NA other upstream 1405777 43508719 ~ 43565770 (+)
G1452362 NA other upstream 1477410 43491174 ~ 43492068 (+)
G1453889 NA other downstream 21637 45050729 ~ 45051005 (+)
G1453914 NA other downstream 40879 45069971 ~ 45070925 (+)
G1454049 NA other downstream 229383 45258475 ~ 45259571 (+)
G1454127 NA other downstream 306202 45335294 ~ 45336523 (+)
G1454824 NA other downstream 827157 45856249 ~ 45858501 (+)

Expression


Co-expression Network