LOC110493947 (LOC106565236)


Basic Information

Item Value
gene id LOC110493947
gene name LOC106565236
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45063682 ~ 45069411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568567.2
GTACTGAgtcagaggggcgctgtttccctcaCTCAGATGATTTCTCCAGTGAGATTCAGCCAATTGCGAATTGATGGAAAATGATGAAAACgcagagagacgaaagataaatAATTGTatcattgttattttttttattggtcAAACCTGggttcccttggcatccatgaatacacaccattGACTGCACTAGATTGCAAAAATAAGATATTCCCAATAGCATGTCTTGCagggggacttttattttgaaacagTCCGCGATCATGGTGGCAGCATAATATCCTGCTGCTAGGAGAACTATAATCATCTGTTTAGCTAGCTTGAGTCGAACAGAGCGTGTCACCTGTCCCCAATGGGGTTCAATAAGACGTACATCAGTATCGGGTATGCCTCTTTTGGCATGCTTATGGGATTCTCAGCGTTTCTCGTGTGGAACATCGCGTACAACCAACCATGGACAGCTGCAATGGGAGGATTATCAGGTGTGCTGGCGCTCTGGGCCCTCATCACCCACATCATGTACCTGCAGGACTACTGGCGCACCTGGCTGAAGGGCCTCAAATTCTTCCTCTTCATCGGAGTCGTCTTCTCCCTGCTGGCCGTGGTGGCTTTCATTACCTTCCTCTCCCTTGCCATTACCAACAAAGAGTCCATGACTGACCCGAGGAGCCTGTTTCTTTCGGGCGTGTGGAGCTTCATGACTCTAAAGTGGTCCTTCCTGCTGGCTCTCTATTCCCACCGCTACCGCAAGGAGTTTGCCGACGTCAGCATCCTCAGTGACTTTTGATGAGGGCCCTTGAacagcccccccccacccaatGGAGGTCTATGGAAGACTAACTAGCAGGGCTCCTAACCTGAGGGTGCTAactaggggagaagggagggagtgaAGATTTGAGGGGTTGGTGAAGCCAAGTAGTCATGACGAGGATGAGTGATGGAATGAGGGTTGATCTGAAAGGCGTGGGGTAGCTGCACATACACCAGATGTCTTCCACCAATCGCTTGCTTATAAATCCACGTGGGGAGAGTGAACGAGTACACACTTTGGGGAGAAGGGTAGTGGGGAGAAGGGTAGTGAATCGGAACGCAacctgtgtgttgtctgtgttaatgggAGAATTAGTACCTGGACCTCTGTCCATGCCCGCACCTTCTCGGTTagatcccccccctctctctttctatatctgTAAACAGGGTATGCTCAACCCCTGCTAGGCCAGTCTATCCACAAGTTCATCCCTATGTTATGCCTTTTATGGATTTGACTGTTccaatgtgtatgtatgtgacaCTGTCTGTGCTCCTCTTGTATGTCTTCGACATGTTTTTAGAGTCAATATCTCCCTTTTTATGAGATTTGAATCTTCTTTTTGGTGACTTTGTGGGTAATCCTTGTTAATTGTGTACATCACGTGTgaaaactcattccacggagggcctagtgtctgcgggttttcgttcctcccttgtacttgattgatgtaggtcactaattagtaaaaaAAACTCCTTTCACCTGGTTGCCTCTGTTGTAATTGAAAGGAAAACcccaaaacctgcagacactaggccatTCGTGGAATGAGTTTAACAACCCTGCTGTACATCTTCCTGTGCTTATATACCTAGGAACATATTCTTaacaagatatatatatatatataattgatgTGGTTATGATAGAGAATTTGTTTCCATTCTCTTGCCACAAGGGGGAGTCAGTCGATCAAATGTTGCGGCTGTTGGTAAAACACCCCACTCATTTAGAAAGTTGTTAGAAAACAGAGCAAAGTTTATCTCCACacatataaaacatgcattataCACAACAAAAGGACACGTCACAGGCCTGTTTGGGGAAATCCTagtagtcttttttttttttttttttggatgaCTGTTTTGATCTGTGTTATCGATGTGTGAACTTTTAGTCCACAGAAACCTGCTGTCACCTCGGAGTCAGTGTATGTGCTGAAGCAACTACATTTAGAGTATCATGTCTTAACACTTATGTATTATGAAACGGTTATAATGCTTTGGAAATGAGACTTGTATAATGTCTTATAGCGTTACACCTGTCAGTGTTCGACACTATTTCAAAACATCCCCCAAAAATAGTTTTTGAAGAGATTATATGAAGAAGGATTGCACTACCATCACAGAATGTTAGAACAACTGCCTTTTTTTCACAGCAGTTGCCAATGGAAACCCAACTGCCTCGTCTTATTTGAACGGAGAACGCTCAAAGGAGGGAGCTCCTTTTGTGGAATTTGTGTCATTGCTGTGCCTTCGCTTTAGCTCGCAAACGTTATTCACCATCATCATACTGCTGCTTATGGAGATTAATTTGATTGTGCTCTAACTTTTTTTCCCCCTTGACATCTGTTTTCTTCTCTGTGGGCTACCACATGTATCACATTGTACTATAAAGAAACATGACATTGTGTATATCCACATGTATGTCTGTTGTACAGGTATGTCTGTGTGAGAGCCATAATAATAAAGTATAATTTTATGACA
>XM_021568568.2
TGAgtcagaggggcgctgtttccctcaCTCAGATGATTTCTCCAGTGAGATTCAGCCAATTGCGAATTGATGGAAAATGATGAAAACgcagagagacgaaagataaatAATTGTatcattgttattttttttattggtcAAACCTGggttcccttggcatccatgaatacacaccattGACTGCACTAGATTGCAAAAATAAGATATTCCCAATAGCATGTCTTGCagggggacttttattttgaaacagTCCGCGATCATGGTGGCAGCATAATATCCTGCTGCTAGGAGAACTATAATCATCTGTTTAGCTAGCTTGAGTCGAACAGAGGTGAGTTTCTCAAAATAAGGCACTTGTTTTTAAACGTTGAAgttattgttttttcccccccattCTACTTGTAGCGTGTCACCTGTCCCCAATGGGGTTCAATAAGACGTACATCAGTATCGGGTATGCCTCTTTTGGCATGCTTATGGGATTCTCAGCGTTTCTCGTGTGGAACATCGCGTACAACCAACCATGGACAGCTGCAATGGGAGGATTATCAGGTGTGCTGGCGCTCTGGGCCCTCATCACCCACATCATGTACCTGCAGGACTACTGGCGCACCTGGCTGAAGGGCCTCAAATTCTTCCTCTTCATCGGAGTCGTCTTCTCCCTGCTGGCCGTGGTGGCTTTCATTACCTTCCTCTCCCTTGCCATTACCAACAAAGAGTCCATGACTGACCCGAGGAGCCTGTTTCTTTCGGGCGTGTGGAGCTTCATGACTCTAAAGTGGTCCTTCCTGCTGGCTCTCTATTCCCACCGCTACCGCAAGGAGTTTGCCGACGTCAGCATCCTCAGTGACTTTTGATGAGGGCCCTTGAacagcccccccccacccaatGGAGGTCTATGGAAGACTAACTAGCAGGGCTCCTAACCTGAGGGTGCTAactaggggagaagggagggagtgaAGATTTGAGGGGTTGGTGAAGCCAAGTAGTCATGACGAGGATGAGTGATGGAATGAGGGTTGATCTGAAAGGCGTGGGGTAGCTGCACATACACCAGATGTCTTCCACCAATCGCTTGCTTATAAATCCACGTGGGGAGAGTGAACGAGTACACACTTTGGGGAGAAGGGTAGTGGGGAGAAGGGTAGTGAATCGGAACGCAacctgtgtgttgtctgtgttaatgggAGAATTAGTACCTGGACCTCTGTCCATGCCCGCACCTTCTCGGTTagatcccccccctctctctttctatatctgTAAACAGGGTATGCTCAACCCCTGCTAGGCCAGTCTATCCACAAGTTCATCCCTATGTTATGCCTTTTATGGATTTGACTGTTccaatgtgtatgtatgtgacaCTGTCTGTGCTCCTCTTGTATGTCTTCGACATGTTTTTAGAGTCAATATCTCCCTTTTTATGAGATTTGAATCTTCTTTTTGGTGACTTTGTGGGTAATCCTTGTTAATTGTGTACATCACGTGTgaaaactcattccacggagggcctagtgtctgcgggttttcgttcctcccttgtacttgattgatgtaggtcactaattagtaaaaaAAACTCCTTTCACCTGGTTGCCTCTGTTGTAATTGAAAGGAAAACcccaaaacctgcagacactaggccatTCGTGGAATGAGTTTAACAACCCTGCTGTACATCTTCCTGTGCTTATATACCTAGGAACATATTCTTaacaagatatatatatatatataattgatgTGGTTATGATAGAGAATTTGTTTCCATTCTCTTGCCACAAGGGGGAGTCAGTCGATCAAATGTTGCGGCTGTTGGTAAAACACCCCACTCATTTAGAAAGTTGTTAGAAAACAGAGCAAAGTTTATCTCCACacatataaaacatgcattataCACAACAAAAGGACACGTCACAGGCCTGTTTGGGGAAATCCTagtagtcttttttttttttttttttggatgaCTGTTTTGATCTGTGTTATCGATGTGTGAACTTTTAGTCCACAGAAACCTGCTGTCACCTCGGAGTCAGTGTATGTGCTGAAGCAACTACATTTAGAGTATCATGTCTTAACACTTATGTATTATGAAACGGTTATAATGCTTTGGAAATGAGACTTGTATAATGTCTTATAGCGTTACACCTGTCAGTGTTCGACACTATTTCAAAACATCCCCCAAAAATAGTTTTTGAAGAGATTATATGAAGAAGGATTGCACTACCATCACAGAATGTTAGAACAACTGCCTTTTTTTCACAGCAGTTGCCAATGGAAACCCAACTGCCTCGTCTTATTTGAACGGAGAACGCTCAAAGGAGGGAGCTCCTTTTGTGGAATTTGTGTCATTGCTGTGCCTTCGCTTTAGCTCGCAAACGTTATTCACCATCATCATACTGCTGCTTATGGAGATTAATTTGATTGTGCTCTAACTTTTTTTCCCCCTTGACATCTGTTTTCTTCTCTGTGGGCTACCACATGTATCACATTGTACTATAAAGAAACATGACATTGTGTATATCCACATGTATGTCTGTTGTACAGGTATGTCTGTGTGAGAGCCATAATAATAAAGTATAATTTTATGACA

Function

NR:

description
PREDICTED: heme transporter hrg1-A-like

GO: NA

KEGG:

id description
K15380 SLC48A1, HRG1; solute carrier family 48 (heme transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568567.2 False 2532 mRNA 0.44 4 45063682 45069411
XM_021568568.2 True 2602 mRNA 0.44 3 45063686 45069411

Neighbor

gene id symbol gene type direction distance location
LOC110493946 LOC106565237 coding upstream 34590 44969478 ~ 45029092 (+)
LOC110493942 bin2 coding upstream 133526 44895963 ~ 44930156 (+)
LOC118940467 NA coding upstream 205411 44847117 ~ 44858271 (+)
LOC110493938 LOC106565241 coding upstream 268742 44769476 ~ 44797689 (+)
LOC110493936 LOC106565244 coding upstream 447833 44601903 ~ 44615849 (+)
LOC110493949 LOC106565235 coding downstream 10195 45079606 ~ 45087749 (+)
trnaq-uug-4 NA coding downstream 284067 45353478 ~ 45353549 (+)
LOC110493956 LOC106565228 coding downstream 449315 45518726 ~ 45526398 (+)
e3 e3 coding downstream 497843 45567254 ~ 45572753 (+)
LOC110493964 LOC106565225 coding downstream 684358 45753769 ~ 45827044 (+)
G1453885 NA non-coding upstream 14468 45045996 ~ 45049214 (+)
G1453879 NA non-coding upstream 20766 45042433 ~ 45042916 (+)
G1453667 NA non-coding upstream 32211 45031217 ~ 45031471 (+)
G1453666 NA non-coding upstream 34118 45029367 ~ 45029564 (+)
G1453661 NA non-coding upstream 114805 44948487 ~ 44948877 (+)
G1453913 NA non-coding downstream 18345 45087756 ~ 45091335 (+)
G1453915 NA non-coding downstream 23684 45093095 ~ 45094284 (+)
G1453990 NA non-coding downstream 103379 45172790 ~ 45172996 (+)
G1454023 NA non-coding downstream 143126 45212537 ~ 45212737 (+)
G1454024 NA non-coding downstream 143430 45212841 ~ 45213162 (+)
G1453889 NA other upstream 12677 45050729 ~ 45051005 (+)
G1453605 LOC106565239 other upstream 208943 44835997 ~ 44854739 (+)
G1452804 LOC105896813 other upstream 543205 44513069 ~ 44520477 (+)
G1452399 NA other upstream 1456901 43606313 ~ 43606781 (+)
G1452369 NA other upstream 1499981 43508719 ~ 43565770 (+)
G1453914 NA other downstream 560 45069971 ~ 45070925 (+)
G1454049 NA other downstream 189064 45258475 ~ 45259571 (+)
G1454127 NA other downstream 265883 45335294 ~ 45336523 (+)
G1454824 NA other downstream 786838 45856249 ~ 45858501 (+)
G1456570 NA other downstream 2158808 47228219 ~ 47228796 (+)

Expression


Co-expression Network