LOC110493949 (LOC106565235)


Basic Information

Item Value
gene id LOC110493949
gene name LOC106565235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45079606 ~ 45087749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949966.1
TTAGCCCAGCAAAGCAGATGGTTTGTTGTTGTTCTGCATGCAGGTTGAGGAGATGGGAAACTGTAGGTGAGGAATTCAGcaaagagacacagggagagacagaagttTTGACTGGGAGTAAAGCCAAAACCTATGGATCTTCAACAGATTGCAGATTAGAAGCGTGAAGTGTATCGGCCTCATTCTTCTTGGTTTCACTGGAGGAAGAAGACTTCTAGGCCTTTGACTCTCTATCAGAACTTCCTGGGATAACGGTTGTCCCACACGGCTATCTGAAGAAGAGaaaagacagggaaagagagaaataaagtgCAAAAACCACCCTGCCTCGGAAGGGGAAGAAGGACGGTGGTCctaagagggaggaggagatgcGCGAGGAGGTGTCCTGCACCAACTCCCCCGAGGGGGGGCTGGGGGCCAGCGAGGAGGAGCTGGAGAGGGGCTCCAAGAAGAGCGGGCAAACAGGGGGCCGAAAGCGGGTGCCGTACCACAAGAAAGACAATCTGGGTCGGGCCGAGGAGAGGGCCATTGTCAGCGGGAGCCCCAACAGCCTGGTTCCGTCGGGGCCCAAGCGGCAGAAGAAGCAACAGAACTCCCCCATGGCGGTGGTATGTGTGGCCCCTTCCTCGCTGGGCTCCAGCGGCCTCGGCTTAGGTTCGGGCGGCGAGCCCTTCGAGGACCTGCACACGCAGCGAGTGATCGCCAACGTGCGCGAGCGCCAGCGTACGCAGTCGCTGAACGACGCCTTCGCCTCGCTGCGTAAGATCATTCCCACGCTGCCATCGGACAAGCTGAGCAAGATTCAGATCCTGAAGCTAGCGTCGCGCTACATCGACTTCCTCTACCAGGTACTGCAGAGTGATGAGATGGACGCCAAGCTGGCCAGCTGCAACTACTTGGCCCACGAACGGCTCAGCTATGCCTTTTCCGTCTGGAGGATGGAGGGCGCCTGGGCCATGTCAGCCAGCCACTAGTGTCCCCTATCTGTCCTGCTCTACCCGTCCTGTTCTGTCCTAACCCCACTATCTCTGTCCTCCACCTAAGCCACTATCTCTGCCCCCTCTTGTAACCCCTAACCCACTATCAATGTAACCCCTAAAGCCACCATCTCTGTCCTCCTTTAAGCCATTATTTCTGCCCCTCCTTCTAACCACAACCCAGAGTCACTGTTCACTCCCCAACCTTTTTACCCATTCTGTCCCAATGTGTCACTCACCTATCCACTGCCCCATCACTCCCACCATACCCGTTCACCATTCGACCTTGCCCCTCCCCTTCCGGCTCAAATGCCCCCTGACAATGTAGCCCCTAACTCCACAAGCGTCTACGGTGCACCCCTGCAGGAAGGACGCCAAATGGATGgactcatctccctctctttaaAAGGTCTGTTCCTGTCGAACCAGTAGTTCCCCCCGCTATACCCTTATCTCCCGTTCTTTGGAAGCCCTGCCCCACAGACATGGGCATTGGACCGGACACATGCTTCGGTTTAAGGACAGATATCCAGTCGACTCTCCTTGTGCAGCCTGACAGACAGTATGATAATgccaacatacagtatgtgacaaACTTCGGAACTGAAGTGAGGAGGATACTTAAGGGTCACATGATGAACTTTCTGGACGTTAAAAACGTCCAACGCATCggccctgtccctgtccctttaTGCCACTTCAAAAGACTCTTTAAAAGAGGAAGATTCTTTGACCACTGAGATGACTTATGATCGTGATAATTGCAGTGATGATCGTCATAAGGATGCCAGAGTAATCGATAGCTGGTGGTCCCAGCCCAACGAATGTTTACAGCAAAGATGCTTATAAGCTTTAGGCTTTTCAACCTCAGATGTATAGGTAGGAAAAGCCAAAGAAGCCTGACGCACATTTTCAGCAGTTGTATAAACTAAATCGGCTTGATTTCTGTTGCCTTGTACATGTTTTTCTCTGTGTTGCATTATTTCCCTTCACAGCGAATGGATTTAGCATGTGCATATGCATATTACATTATAATGACTTTATATTAGAGTAATTAAGCAATAATCTATGCAGGCAACCTGTAATACATGAGTAATGCACACAGTTTTGTAGCATGCACAGATTATGGATAGATTAGACATAGACATAGTGGATAGATTCCACTAATGTCTTTCTGATATATATATACTTGTCTGTAGGATTTAAGTATGAAAAACATAATATGCAAAACAACAATGAAATAGTACATTACATAAAGAGTAACAGATAACATTTTGTTGTACTTTGTGCAAGTGACGGTCTAGTAGTTTTAAATGCAAGTTTAGTAATTCCTCAGGATTTCTCTTTAACATAGTACTATGCACATACTGCAATACCCTATCAGTAAATGTATTAAGAATGGAAAATAGTGCCAtgtactttttaaaaacatttgatAAATTCACATTTTGTGCTACTGGGTATTGTTAGGTCACGGCAATGTTATCTGATATACTGTCGCCAGAAAATGTAGTTTGTCAATATTTTTTCATCCTAATGCTCAGCTGTGGTTctcttagattttttttgtctccAGCTTTTCATTACATGAGCTCCTgtggaaaataataataaatgctgTTTTAATAAAAATACCACTGAAATAGTCTGGAAAAAGCCCATTTTCAAAAACACGTTGCATCTTTCTGTCTCATAGAAACTTGTCTAACACCTGTGCACATATTGAGAGTGTAGTATGCATAACAAAGAGTACATGGATAGACAAGACAATGTCTTATATGTTATATCTTATAAAACAAGATACAAAATAAGTGGATAGCAATAGCCTTTGTATTTGGACACAGCAAGGCAGGATCCAAGATTTTTGTCAAAATGTGTTACATTACAAAGTCATGTGTTTTTACATTACCGAAATAGCTGAGTGCTTGGTGCAAGTAAAATATTGCCCAATATTTCAAACATTATTGAAAGGATACAAAATATACACTTCAGAAAAAAACTATGTTGAGAACTTTAATTACCCTTTTATTGAGGAAAACAGTTTAtagaaaaaaatatagaaaaaaaaacaaaacaacattatTTTTTACAAAGTACAAACCAATAAAGACAAACAGTGAGAAACAAA

Function

NR:

description
twist-related protein 2-like

GO: NA

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949966.1 True 3108 mRNA 0.45 2 45079606 45087749

Neighbor

gene id symbol gene type direction distance location
LOC110493947 LOC106565236 coding upstream 10195 45063682 ~ 45069411 (+)
LOC110493946 LOC106565237 coding upstream 50514 44969478 ~ 45029092 (+)
LOC110493942 bin2 coding upstream 149450 44895963 ~ 44930156 (+)
LOC118940467 NA coding upstream 221335 44847117 ~ 44858271 (+)
LOC110493938 LOC106565241 coding upstream 284666 44769476 ~ 44797689 (+)
trnaq-uug-4 NA coding downstream 265729 45353478 ~ 45353549 (+)
LOC110493956 LOC106565228 coding downstream 430977 45518726 ~ 45526398 (+)
e3 e3 coding downstream 479505 45567254 ~ 45572753 (+)
LOC110493964 LOC106565225 coding downstream 666020 45753769 ~ 45827044 (+)
dlgap4b LOC106565221 coding downstream 1076729 46164478 ~ 46239382 (+)
G1453885 NA non-coding upstream 30392 45045996 ~ 45049214 (+)
G1453879 NA non-coding upstream 36690 45042433 ~ 45042916 (+)
G1453667 NA non-coding upstream 48135 45031217 ~ 45031471 (+)
G1453666 NA non-coding upstream 50042 45029367 ~ 45029564 (+)
G1453661 NA non-coding upstream 130729 44948487 ~ 44948877 (+)
G1453913 NA non-coding downstream 7 45087756 ~ 45091335 (+)
G1453915 NA non-coding downstream 5346 45093095 ~ 45094284 (+)
G1453990 NA non-coding downstream 85041 45172790 ~ 45172996 (+)
G1454023 NA non-coding downstream 124788 45212537 ~ 45212737 (+)
G1454024 NA non-coding downstream 125092 45212841 ~ 45213162 (+)
G1453914 NA other upstream 8681 45069971 ~ 45070925 (+)
G1453889 NA other upstream 28601 45050729 ~ 45051005 (+)
G1453605 LOC106565239 other upstream 224867 44835997 ~ 44854739 (+)
G1452804 LOC105896813 other upstream 559129 44513069 ~ 44520477 (+)
G1452399 NA other upstream 1472825 43606313 ~ 43606781 (+)
G1454049 NA other downstream 170726 45258475 ~ 45259571 (+)
G1454127 NA other downstream 247545 45335294 ~ 45336523 (+)
G1454824 NA other downstream 768500 45856249 ~ 45858501 (+)
G1456570 NA other downstream 2140470 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 2717609 47805358 ~ 47807518 (+)

Expression


Co-expression Network