trnaq-uug-4


Basic Information

Item Value
gene id trnaq-uug-4
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45353478 ~ 45353549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaq-uug-4
GGtcctatggtgtaatggttagcactctggactttgaatccagcgatccgagttcaaatctcggtaggacct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaq-uug-4 True 72 mRNA 0.44 1 45353478 45353549

Neighbor

gene id symbol gene type direction distance location
LOC110493949 LOC106565235 coding upstream 265729 45079606 ~ 45087749 (+)
LOC110493947 LOC106565236 coding upstream 284067 45063682 ~ 45069411 (+)
LOC110493946 LOC106565237 coding upstream 324386 44969478 ~ 45029092 (+)
LOC110493942 bin2 coding upstream 423322 44895963 ~ 44930156 (+)
LOC118940467 NA coding upstream 495207 44847117 ~ 44858271 (+)
LOC110493956 LOC106565228 coding downstream 165177 45518726 ~ 45526398 (+)
e3 e3 coding downstream 213705 45567254 ~ 45572753 (+)
LOC110493964 LOC106565225 coding downstream 400220 45753769 ~ 45827044 (+)
dlgap4b LOC106565221 coding downstream 810929 46164478 ~ 46239382 (+)
LOC110493969 LOC106565220 coding downstream 890212 46243761 ~ 46252957 (+)
G1454130 NA non-coding upstream 14400 45338855 ~ 45339078 (+)
G1454129 NA non-coding upstream 14769 45336949 ~ 45338709 (+)
G1454128 NA non-coding upstream 16680 45336595 ~ 45336798 (+)
G1454125 NA non-coding upstream 19864 45333395 ~ 45333614 (+)
G1454124 NA non-coding upstream 21376 45331881 ~ 45332102 (+)
G1454189 NA non-coding downstream 82284 45435833 ~ 45436511 (+)
G1454110 NA non-coding downstream 94972 45448521 ~ 45448758 (+)
G1454109 NA non-coding downstream 97569 45451118 ~ 45451368 (+)
G1454112 NA non-coding downstream 100156 45453705 ~ 45454517 (+)
G1454114 NA non-coding downstream 130361 45483910 ~ 45491063 (+)
G1454127 NA other upstream 16955 45335294 ~ 45336523 (+)
G1454049 NA other upstream 93907 45258475 ~ 45259571 (+)
G1453914 NA other upstream 282553 45069971 ~ 45070925 (+)
G1453889 NA other upstream 302473 45050729 ~ 45051005 (+)
G1453605 LOC106565239 other upstream 498739 44835997 ~ 44854739 (+)
G1454824 NA other downstream 502700 45856249 ~ 45858501 (+)
G1456570 NA other downstream 1874670 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 2451809 47805358 ~ 47807518 (+)
G1456969 NA other downstream 2480031 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 2677365 48030892 ~ 48036585 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnaq-uug NA coding NC_053115.1 CM020912.1 12332027 ~ 12332098 (-)
striped catfish (Pangasianodon hypophthalmus) trnaq-uug_2 NA coding NC_047605.1 CM018551.1 23932866 ~ 23932937 (+)
tiger barb (Puntius tetrazona) trnag-gcc_15 NA coding NC_056700.1 CM032069.1 6038306 ~ 6038380 (+)
tiger barb (Puntius tetrazona) trnaq-uug_24 NA non-coding NW_025048207.1 JAEQBD010000552.1 51763 ~ 51834 (+)
mexican tetra (Astyanax mexicanus) trnaq-uug_2 NA coding NC_035909.1 CM008312.1 37092999 ~ 37093070 (-)
mexican tetra (Astyanax mexicanus) trnaq-uug_7 NA coding NW_019171211.1 APWO02000809.1 1981 ~ 2052 (-)