LOC110493956 (LOC106565228)


Basic Information

Item Value
gene id LOC110493956
gene name LOC106565228
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45518726 ~ 45526398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568582.2
TCTATTACCTCCAGCATTCCTCCATTCTGCGCTCCCCTACTGCATGCTAGCCAATCATAATGTCCCTCGGTCCCTCCCCTTTCCAGATAAAAAGAGGGCCAGGGAACAGTGAGCTCCATCTGcacgagtctctctctctctctgcagcaaaTCTCCCAGGCTCTACAGACCACCTACTGTAGCACTTGCTAAAACCTAAGTCatcatgtccaccagagctgtgaaGAGCACCAGCTACTCTTTGAGGTCCTCCTCTGCAGGCCTGGGGTCTCAAAACTTCAGCAGCAACTCCAGCAACGGCTATGGCGGCGGAGCCAGACAACAGAGCTACAGTGTCCGCAGCTCTTATGGGGGTGTTGGCAGCAGCGCCGGGGGTGTGGCAGCAGGTGGCTATAGGGTAGTTGGGGGGTACGTGGCTGGAGGGACTGGGCAAAGAGGGGGCGGGATGGAGTTTGGGTATGCGGGCATGGGTGTTGGCGGTGGTATGGGAATGGGGGGTGGTATGGGGATGGGGGGTGGGAAGATGACATGTGTGGGACCCCCTCCGATCACCGCTATTCAGGTGAACAAGAGCCTGCTGGCCCCCCTAAACCTGGAGATCGACCCCAACATCCAGGTGGTCCGCACCCACGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTCGCGTCCTTCATCGATAAGGTGCGTTTCCTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGGGTCTCCTGCAGGACCAGACCACCACCCGCTCCAACATCGACGCCATGTTTGAGGCCTACATCTCCAACCTGCGCAGACAGCTTGATGGTCTGGGCAACGAGAAGATGAAGCTGGAGGGGGAGCTGAAGAACATGCAGGGCCTGGTTGAGGACTTCAAGAACAAGTATGAGGATGAGATCAACAAGCGTACCGAGTCTGAAAACAACTTTGTTCTCCTCAAGAAGGATGCAGATGCTGCCTACATTGTCAAGACGGAGCTGGAGGCCAAGCTGGACTGTCTTACTGATGAGATTGAATTCCTCAGGACTATCTATGACGCGGAGCTGCTTGAGCTGCAGGGCCAGATCAAGGACACCTCTGTTGTGGTGGAGATGGACAACAGCCGTAACCTGGACATGGACTCCATCGTGGCTGAAGTGCGCGCCCAGTACGAGGACATCGCCAACCGCAGCAGAGCTGAGGCCGAGACCTGGTATACGCAGAAATATGAACAGATGCAGGTGTCAGCCACCAACTATGAGGACAATTTGAAAAACACCAAGGTAGAGATCGCAGATATGAACCGCAAAATCATGAGATATCAGTCTGAAATTGACAAGATGAAGGGTCAGCGCGGCCACCTGGAGAACCAGATCGCTGAGGCGGAGGAGCGTGGTGAGCTGGCGGTGAAGGACGCCAGGCTTCGTATTAATGACCTCGAGGTGGCCCTGCAGAGAGCCAAGCAGGATATGACCATGCAAGTACGCCAGTACCAGGAGCTGTTGAACGTCAAACTGGCCCTGGATATTGAGATCGCCACCTACAGGAAGCtgctggaaggagaggagagcaggcTGGTGAATGGAATCAAGTCGGTCAACATCTCCAAACAGTCTTCTTCAACGAACTACAACTCTTACCCCCTGGAAAGCAGTCGCACCACCAGCTATGTCAGCGGCTCAACGGGGGGATACAAGGTCAGCAGCACCAGCTACGGCAGCAGCACTTACGTCAGTGGCCATGAGAGCCGCCATATAGACAGCAGCTTCGACCTGCCTGGCAGCATCACCCTGGTAGGCACTACCAGCAGAGATGTGGATGCCAGCACCAGCCTGGGAGGCGCCAAAGGCACCAGCAGAGACATGGATGTCAGTATCAGCCTGGGAGGCAGCAACAGCCTGGCTACTAGCAGAGACATGGATGCCAGCGTCAGTGTCAATAGCAGTTCCACTGTCACCAACAACAAATCCCATACCACCTTAGTCAAGACCGATGATGCCGAGGTGACCTCGAATGTGGCTTCTGATGCGGCGTCCAACCATGCCGAGGAACAGGCGGCTGAGAGCGACAAATGAGGAGATTTCGTCATCGTGGGCGACCGCGTAATTAGCATACTGTGGATCTATCTGTCGCAGATATATGCTTCTCCAACCTACCTTTCACCCTTCCACTAGTTTCACTTTTCTAGCCAGGTTATTAGTGTATTTACCTGCTGAACAGAACAGTGACATATCAAACAGGCTACATATATCCACCTGGAATCACAGGGAGTCTAACTGTCTCCTCAGTCTAACTGTAACTTTTCCTACCCACAAAGGGTTTGTTTTAAAATGGTAAATGTGAAAGGTTGGGGGTAAGATTTCCCTTAAAAGGCCCCTGAAAGTCGACCCCTAGTGTCCATTCGAGTCACCAGCAGGTGTCATTGTGacacatgtttctctctctgcttgctcTGAGACACATTAAAGTACTTGGAGAAAAAACTAA

Function

NR:

description
keratin, type II cytoskeletal 8-like

GO:

id name namespace
GO:0045095 keratin filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568582.2 True 2477 mRNA 0.53 9 45518726 45526398

Neighbor

gene id symbol gene type direction distance location
trnaq-uug-4 NA coding upstream 165177 45353478 ~ 45353549 (+)
LOC110493949 LOC106565235 coding upstream 430977 45079606 ~ 45087749 (+)
LOC110493947 LOC106565236 coding upstream 449315 45063682 ~ 45069411 (+)
LOC110493946 LOC106565237 coding upstream 489634 44969478 ~ 45029092 (+)
LOC110493942 bin2 coding upstream 588570 44895963 ~ 44930156 (+)
e3 e3 coding downstream 40856 45567254 ~ 45572753 (+)
LOC110493964 LOC106565225 coding downstream 227371 45753769 ~ 45827044 (+)
dlgap4b LOC106565221 coding downstream 638080 46164478 ~ 46239382 (+)
LOC110493969 LOC106565220 coding downstream 717363 46243761 ~ 46252957 (+)
LOC110493971 NA coding downstream 749409 46275807 ~ 46278239 (+)
G1454114 NA non-coding upstream 27663 45483910 ~ 45491063 (+)
G1454112 NA non-coding upstream 64209 45453705 ~ 45454517 (+)
G1454109 NA non-coding upstream 67358 45451118 ~ 45451368 (+)
G1454110 NA non-coding upstream 69968 45448521 ~ 45448758 (+)
G1454189 NA non-coding upstream 82215 45435833 ~ 45436511 (+)
G1454248 NA non-coding downstream 67982 45594380 ~ 45594636 (+)
G1454554 NA non-coding downstream 84718 45611116 ~ 45611409 (+)
G1454561 NA non-coding downstream 89016 45615414 ~ 45615646 (+)
G1454613 NA non-coding downstream 140523 45666921 ~ 45713858 (+)
G1454621 NA non-coding downstream 149571 45675969 ~ 45684720 (+)
G1454127 NA other upstream 182203 45335294 ~ 45336523 (+)
G1454049 NA other upstream 259155 45258475 ~ 45259571 (+)
G1453914 NA other upstream 447801 45069971 ~ 45070925 (+)
G1453889 NA other upstream 467721 45050729 ~ 45051005 (+)
G1453605 LOC106565239 other upstream 663987 44835997 ~ 44854739 (+)
G1454824 NA other downstream 329851 45856249 ~ 45858501 (+)
G1456570 NA other downstream 1701821 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 2278960 47805358 ~ 47807518 (+)
G1456969 NA other downstream 2307182 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 2504516 48030892 ~ 48036585 (+)

Expression


Co-expression Network