LOC110493964 (LOC106565225)


Basic Information

Item Value
gene id LOC110493964
gene name LOC106565225
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45753769 ~ 45827044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568597.2
TGGAGGTGCTTGCTTGCAGAAATACAGGGAACCAGTGCTGATAATATCCCGCAGGCGAATAGGGTACACCTTGCGCCTCATAGCGCAATTTTTGTCCGGTGCTATTTTGTATCTAATCTCCGAGGGTGCTGTCATCCAGGAAGGATTTGGATACTATTTAGTGAGCGTGCTCCGCCTAATGTGAGTTTTTCGTCCACGACTTGAAACAAGAACAAAAGCAATGGGAGCATTTGGAGTGATAATATGGATTTTACATTATATGGGACTCTATATTCAGTTTAACGCCGCATACAAACCGACTGTGCGAACCGAGGTGGACAATCATATATCTGGAAATGCTCTCTTCACGGAGGTCCCTCATGACACCACAACGCATAGCGGTCAGGATGTGGAGATGGCCTGTTCATTCCGGGGGGCGGGGCCCTCCTACTCCCTGGAGATCCAGTGGTGGTACATGAAGAACCACAGAGACTGGCCAGAGAAACCCGCCTGGACCTCCAATCAGGTGGTGCCAATGGAGGAGATGTCTAAGGATGCCACCAAAATAAGTGTGGTGAAAGTGGCTGGGAGCAACATCTCCCACAAGCTCCGCCTCTCCAGTGTCAAGCAGTCAGACGAGGGCACATACGAGTGCCGTGTCATCGACTTCAGCGGCAGCGTTGCGCAGCACCACCGCGTCCGGGCCTACCTCCAGGTGGAAGCCGAGAGATGGCTGGGTCACGGGTCAGCAGACACCCAGCCCCAGGAGCCCCGACACAAGGGACAGGGGAGCCAGGTGCACCCCCACCAAACAGAGGACCGGGAACTGAAGAGGCGATCGGCCGATGACAGCACCACGGACTGCACTGAGAGCTGTGTGCTCTAGAGTCTGGTTCTGTGTCCAGATAGGAATAACAGGAGTGCATGTTCCCAATTATCTTAAGAAGGATGATTATTTTTACACCAGCAGAGGCCTGGACAAAAACTGCTTAATTTATGTTAAATTTATGAATCGATTTGTTTGGTTGTTTGTTAATCTGAGATTTGTTTATGTTTGTTTGAATTCGGGTTGTCATAGACCACCAGAGGGCATGATCGTGTTGTCTTGGTTCTTAAATGTAATGTTATTTCACATCGCCTTTGTTAAATGCTTTGTCCATGATTTCTGACTCTGGAGTTGTGATGGTTGAAGATGAGGTTGTCGTTGGGTGGAAAGGATGCAGGGAAGGCCTGTATCTCAATAGTATGAAGTATCTTCCTtcctttgtctcctttccttaaTAAGCACTGATCTGAAATTAATGGAAAGGACAAAGCAATATATACCCTAGGGCtcttgagtggcgcagcagtctaaggcactgcttctcagtgatagagatgtcactacagaccctggttcgattctaggctgtatcacaactggctgtgattgggagtcccatagggcggtgcaca

Function

NR:

description
V-set and transmembrane domain-containing protein 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568597.2 True 1437 mRNA 0.49 4 45753769 45827044

Neighbor

gene id symbol gene type direction distance location
e3 e3 coding upstream 181016 45567254 ~ 45572753 (+)
LOC110493956 LOC106565228 coding upstream 227371 45518726 ~ 45526398 (+)
trnaq-uug-4 NA coding upstream 400220 45353478 ~ 45353549 (+)
LOC110493949 LOC106565235 coding upstream 666020 45079606 ~ 45087749 (+)
LOC110493947 LOC106565236 coding upstream 684358 45063682 ~ 45069411 (+)
dlgap4b LOC106565221 coding downstream 337434 46164478 ~ 46239382 (+)
LOC110493969 LOC106565220 coding downstream 416717 46243761 ~ 46252957 (+)
LOC110493971 NA coding downstream 448763 46275807 ~ 46278239 (+)
LOC110493972 LOC106565215 coding downstream 475369 46302413 ~ 46346158 (+)
LOC110493973 LOC106565216 coding downstream 526886 46353930 ~ 46361034 (+)
G1454708 NA non-coding upstream 28430 45725053 ~ 45725339 (+)
G1454697 NA non-coding upstream 33382 45719547 ~ 45720387 (+)
G1454613 NA non-coding upstream 39911 45666921 ~ 45713858 (+)
G1454621 NA non-coding upstream 69049 45675969 ~ 45684720 (+)
G1454561 NA non-coding upstream 138123 45615414 ~ 45615646 (+)
G1454827 LOC106565224 non-coding downstream 41430 45868474 ~ 45869883 (+)
G1454953 NA non-coding downstream 225455 46052499 ~ 46052705 (+)
G1454961 NA non-coding downstream 235480 46062524 ~ 46062740 (+)
G1454966 NA non-coding downstream 241580 46068624 ~ 46068839 (+)
G1454977 NA non-coding downstream 260512 46087556 ~ 46087770 (+)
G1454127 NA other upstream 417246 45335294 ~ 45336523 (+)
G1454049 NA other upstream 494198 45258475 ~ 45259571 (+)
G1453914 NA other upstream 682844 45069971 ~ 45070925 (+)
G1453889 NA other upstream 702764 45050729 ~ 45051005 (+)
G1453605 LOC106565239 other upstream 899030 44835997 ~ 44854739 (+)
G1454824 NA other downstream 29205 45856249 ~ 45858501 (+)
G1456570 NA other downstream 1401175 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 1978314 47805358 ~ 47807518 (+)
G1456969 NA other downstream 2006536 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 2203870 48030892 ~ 48036585 (+)

Expression


Co-expression Network