LOC110493971


Basic Information

Item Value
gene id LOC110493971
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46275807 ~ 46278239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469223.2
tggctaaggtgtatgtaaaattccgacttcaactgtatattttgtaTATAGGTGTGGTGGTACTAGCTAAGTCATGTCTGACTACAACAGTGTACAACAAACCCAAACCAACCCAGGGCCATAGCAAAACATGTCACAGTTGGTTACATAGTGTAACGGCGTCACCGGCCAAAATCTAATCGAATTTGGAGCCAGTCAGTCTACATCTGTAAAGCATAGAATTAGTTTCCAAAAAAGATTACGTTATTTCTCGAACTATGTTTATAAGGGATGATGACAATCGTTGATCCTGTTTTTCAGTTAGATAAAGTGCACAGCTGGGTGCCAAACTGATCCCCTGGACATGAACGGATGCTGGAACCTACCAGAAGGAGTAAAGGCCCTCCAGTTAACACCACCTCGAAAGATTGCCTGCTGCGGTTGTTCAAGAGATGGGTGGGAGGGGCCATCATCAGTATCATGCAGACCAGCCCTCgctgtgaacattcctatgaatttGATCAGTCAGCCACATATTGGCAAGTATCCATCCAGAAACATTCACTTGTCAGTATCAACAACATTCACAGGCTCATCATTTGTACAAATACAGAAGGTAAACCACTTCATTCCTTTGATAACCCAATTGTGAAACATAATTTATCTATACTGACATTATTTGGTTCTTATTTTCTACTTCTTAGATGCATATGATGCCCATGGGCATAAtgtagcctggtggaaccagtcTAATCGCTGTGTTCACCATTCGATTTCACTTGACATTTGATGATATctgaagtgaaatagaaaggTGAATGCAgcaatcaggctggttccaccaggctaatcATAACCATTATTGATAATGCAACCAGTGCTCTGTGTATGCGCATGCGACCGACCTGACGGACGACCGACCGAGGAGCTGATCTACGCTGCTATGCCCATCAATGGAGCTCTGGCAAAGACCTCACCTCTTGCCTCCTCACCAACGGTTGTCGATGGGGAGAACAGAATTAGATACCTGTATGGAGGCAGCACTTTGGAGAATTGCTATGGTGGTACAACTGATTTCTGACTATAACCGGTTACCACAAACCCAAACCAACCCAGGGCGATAGAACAACATGTCACAGTTGGTTGCATAGTGTAACGGCATCACCGGCCTGAATCTAATCCTACACCTGTAGGGATATTAGTTCTGGGATTTGTCTCCTGGGAAAGATTTAACAGCGGACATGGGGAGAGATGAGACAAAACCATCCAGTTATAGAATATTGTGTTGTAGGACAGCTGAGCTGACTGAAGACCTCGGGCATTCAACTCCAGTAGTCGATATCATTTCCACGGTAACATGTATTTACATGACATGATGAAACGTTGAAAATAAGTTGCAAGCGACTTTGGTAGCAAGGCGTTGTAGAACGAGTGTCTTATGAAACACATTCCAGACACTGGCTCTGGCCATGTTGCAATAACTGATTTTGACAGAGACATATCAGCTAGGAGGATAACCAGCTGCAGCTATTAAaaagctatgctagctagctgctgtcagcttggctaaacacaagcaaaagtgtaaagtacttaagtaagaatactttaatgtactacttaagtcgttttttgggg
>TU1664871
CATGCGACCGACCTGACGGACGACCGACCGAGGAGCTGATCTACGCTGCTATGCCCATCAATGGAGCTCTGGCAAAGACCTCACCTCTTGCCTCCTCACCAACGGTTGTCGATGGGGAGAACAGAATTAGATACCTGTATGGAGGCAGCACTTTGGAGAATTGCTATGGTGGTACAACTGATTTCTGACTATAACCGGTTACCACAAACCCAAACCAACCCAGGGCGATAGAACAACATGTCACAGTTGGTTGCATAGTGTAACGGCATCACCGGCCTGAATCTAATCCTACACCTGTAGGGATATTAGTTCTGGGATTTGTCTCCTGGGAAAGATTTAACAGCGGACATGGGGAGAGATGAGACAAAACCATCCAGTTATAGAATATTGTGTTGTAGGACAGCTGAGCTGACTGAAGACCTCGGGCATTCAACTCCAGTAGTCGATATCATTTCCACGGTAACATGTATTTACATGACATGATGAAACGTTGAAAATAAGTTGCAAGCGACTTTGGTAGCAAGGCGTTGTAGAACGAGTGTCTTATGAAACACATTCCAGACACTGGCTCTGGCCATGTTGCAATAACTGATTTTGACAGAGACATATCAGCTAGGAGGATAACCAGCTGCAGCTATTAAaaagctatgctagctagctgctgtcagcttggctaaacacaagcaaaagtgtaaagtacttaagtaagaatactttaatgtactacttaagtcgttttttggggtatctgtagtttactttactatttatatttttgagaacTTTTctttttactccactacatttctatagaaaatatactttttactcccatacattttccctgacacccaaaagtacttgttacatttcgaatgctcaggcaggacaatatggtccaattcacacacctatcaatataacgcgttgtcatcccttctgcctctgatctggtggactcactaaacacaaatactgcatttgtaaatgatgtcttggagtgtacccctggctgtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469223.2 False 1617 mRNA 0.43 3 46275807 46277967
TU1664871 True 1017 lncRNA 0.43 2 46277115 46278239

Neighbor

gene id symbol gene type direction distance location
LOC110493969 LOC106565220 coding upstream 22850 46243761 ~ 46252957 (+)
dlgap4b LOC106565221 coding upstream 36425 46164478 ~ 46239382 (+)
LOC110493964 LOC106565225 coding upstream 448763 45753769 ~ 45827044 (+)
e3 e3 coding upstream 703054 45567254 ~ 45572753 (+)
LOC110493956 LOC106565228 coding upstream 749409 45518726 ~ 45526398 (+)
LOC110493972 LOC106565215 coding downstream 24446 46302413 ~ 46346158 (+)
LOC110493973 LOC106565216 coding downstream 75963 46353930 ~ 46361034 (+)
tpra1 tpra1 coding downstream 85065 46363032 ~ 46375987 (+)
LOC110493975 chchd6 coding downstream 98293 46376260 ~ 46436526 (+)
LOC110493976 plxna1 coding downstream 234711 46512678 ~ 46802202 (+)
G1455069 NA non-coding upstream 79797 46195795 ~ 46196010 (+)
G1455068 NA non-coding upstream 81211 46194377 ~ 46194596 (+)
G1455067 NA non-coding upstream 81599 46193860 ~ 46194208 (+)
G1455066 NA non-coding upstream 82016 46193555 ~ 46193791 (+)
G1455060 NA non-coding upstream 91135 46184448 ~ 46184672 (+)
G1455131 NA non-coding downstream 19542 46297509 ~ 46297720 (+)
G1455166 NA non-coding downstream 103995 46381962 ~ 46386611 (+)
G1455191 NA non-coding downstream 147446 46425413 ~ 46461287 (+)
G1455669 NA non-coding downstream 185419 46463386 ~ 46463600 (+)
G1455679 NA non-coding downstream 191236 46469203 ~ 46469462 (+)
G1454824 NA other upstream 417306 45856249 ~ 45858501 (+)
G1454127 NA other upstream 939284 45335294 ~ 45336523 (+)
G1454049 NA other upstream 1016236 45258475 ~ 45259571 (+)
G1453914 NA other upstream 1204882 45069971 ~ 45070925 (+)
G1453889 NA other upstream 1224802 45050729 ~ 45051005 (+)
G1456570 NA other downstream 950252 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 1527391 47805358 ~ 47807518 (+)
G1456969 NA other downstream 1555613 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 1752947 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 2111115 48389082 ~ 48424478 (+)

Expression


Co-expression Network