LOC110493973 (LOC106565216)


Basic Information

Item Value
gene id LOC110493973
gene name LOC106565216
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46353930 ~ 46361034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568609.2
agctcatgaaacatgggaccaacactttacatttgtGAGAATGTTTTATGCCTATTTGAGTAGAAAGTGTACTTGTTTGCTTTTGGATTATGTGCTCGCCAGAGCCTGCCAACATGTCACTGTGTGAGACTGAAGGACCCTTGCTGCTGGACCTGAGCTGCCCTATCTGTCTGCAACTCCTCTCTGACCCCAAGTCCCTGCCCTGCGGCCATGTCTACTGCTTGGCCTGCCTTGGGAAGTACATGGACACTGACATGGCCAGCCACTTCTGCCCTGAGTGCCAGGTTGAGTTCCAGGTCTCCCAGGCCCTTGGGAATAACTTCAAGATGTGCAGCATCATCGAGAGCTACGAAGCCACCACTGCAGGAAAGGTCAGCTCCGTCACAGATGGAGATGGTGGTGATTGCCACCAAGGGGTAGTGTCACCTGACCAGAGCAATGATGAGACGTCTGAGTGTCTATTAGACATAGAGCAACAGGAGCCACATCATACAGGGAAGGAGGCATCTGAGACAGGCTTGGGAGATACGTCTGCAGTGTCCCCTACTCCTCAGAAGGAAGAACTGCTGGTGGATGTAAGGACCGAGACGGAGACGGCGATGATGGACAAGTCTAAACTACTATTAGCATCTCAGGTAACGGAGCTGACGCTGAGGCTTCAGTTGGCTGAGGACCgactgagggaggaggaggcgaGGGAGGCCGAGGTCAGGACCACCAATGCCCTGTTGAGAAAAAGGGCGGCCAAGCTGCTAGAGCAGATGACGGAGCTGACTCTCAACTATGTTAGTGGGATGACGGAGTTGATCGAGATGGAACTGCGTCCCAGTGAGGAGAGCATGGGCGGACGTGTGTGCCAAGCCTCTGAGCTCAGGGAGAAGTTGAGGGAGGCCCAGCTCCGAGCCAAATCACTCCTGACCGACCAAGACAGTGGGGTGTTCAGTGACGGGCTTCAGGCGGAACAACCGCACATCATGAGGCTGATGGTCCAGAAACCTCTAGAGTTGGACAACAAGTCAAAAGTGAACCCGGGCCGTGCTTGCGCTGAGCTGGAACGGAGGAGTGCGGAGTTAAGGGCAGGAGTCGGGGCGGCTCAGCGCTCTCTGCGCTGCGTCCTCAACCCCTCAGAGGTGACCTTTGACCTAGACACGGCCCACCCCAGCCTGGTCCTGTCAGAGGACCTGAAGACGGTGACCTTCAGCACCAAAAAGCAGCCCTACCCGGCCCTGCCAACAAGGTTCAGTAGCTTCCTCCAGGTTCTGAGCACTCAGAGCTTTTGGGGAGGCGAGCATCGCTGGGAGGTGGAGCTGGACGGATATTCTCTGTGGATAATTGGGGTGTGCTACAGCGAGGCGGTAGCACGCAGCGGGCTAACAAGCGCCCTGGAGAGCAGCCAGGGCTCCTGGTGCCTGATGTGGTTCAACAACCTGCTGAGGGCCTTCGAGCAGAGCCATGACATCCCCCTGAAGAGAACCCTGGCAGTACACAGACTGGAGATCACGTTGAGCTATAACATCAGCCAATGCAGTGGGAAGACTCACGTGTATACCTTTAAGGCGAACCTCAATGAGCCGGTGCATCTGGCCTATAGGATGATGTCAGGCCAACCGAAGGCACACATAAAAGTATGCTCCTGAACTGTCATTGGAACAAAAGAGAACCACATACAAGATTACATTGACTCTTGTTTTTATTAATCCTGTATTCATATCAAACTTTTTTGTTATTTACATGTAATTGTGTTTCAAGTGTTTGTGGGAACAGAGGTGTTTTGGTCTGTGAATGACAGTAAAGAGAAAGAGTTCTGGTTTACATCGAATGACACATGACCCTTTGGTAGCGTAGGCCTCATTGAAATGACCAAATATATTGATTTCCCAACATGATTTACAAATCTCCAACAAATATgcccttgttcttcaatgaatgtATGTTTTTGTCAATAAAGAAACGGTTTGGGACAATAAATTGATGATACGTCAAACCAATGACTGTATACAGTTGCTAGTAAAAGCCtacacagtcttcacattttgttgcCTTAAAATTAAATCTCCGAAGAGAATACATTTCACATTTTTCCTACCGATCTACACAACCAACTCCACATTTCCAAAGTTAAAGAATAATTCTAGAAT
>XM_021568610.2
TAtgggactggccatctctccttagcagtagtaaaaaaaaaaaaagttgtaggGAAATGGCATCCAACTTATATTGCCATATTTTGCCCATGTAGGGATTCAATGTGCTGTAGCCCCACAAGGAAGCAGCCCCAGTCCGTGTCCATTGTTCATTCACTGGAGagaaaaaacgtttttttgtaATGTTTTTGTTATTGTGGTCTTGACAGAATGATAAaatgagtatatatatatatatttttatatataccaAAAATGTACTATATTCGTGGAACGACCCAGTTGCATTTCACCCATGGTGATGGACCTCTATATTTAGCCTACTTAGTAATAGAGAATATGACTGTTCTCGATTTTATGACTCAATGTGAACGCCCAGGTAACGTGCAACATATCAGGAAGTAGGCAAATATTTCTTATCGTCATGGACAGGCTGGCACTTGGTAGAAGTAGGCTATGGCTAATTTAAGACAACTATACATTATTTAACCTTCAGGCCTAACAATCTACATGGGATTTATGCGCTGTCATTCAAAATACGTGCTCTGAACATGACAGTTCCTCACCTGCCAATCCAAAAATTCCTACGCATTGCGTGTGAGAAAACACATATTGCATTATAAATTCAGTCATCACTACCAAACAACAGGATTGTAGAGCCTGCCAACATGTCACTGTGTGAGACTGAAGGACCCTTGCTGCTGGACCTGAGCTGCCCTATCTGTCTGCAACTCCTCTCTGACCCCAAGTCCCTGCCCTGCGGCCATGTCTACTGCTTGGCCTGCCTTGGGAAGTACATGGACACTGACATGGCCAGCCACTTCTGCCCTGAGTGCCAGGTTGAGTTCCAGGTCTCCCAGGCCCTTGGGAATAACTTCAAGATGTGCAGCATCATCGAGAGCTACGAAGCCACCACTGCAGGAAAGGTCAGCTCCGTCACAGATGGAGATGGTGGTGATTGCCACCAAGGGGTAGTGTCACCTGACCAGAGCAATGATGAGACGTCTGAGTGTCTATTAGACATAGAGCAACAGGAGCCACATCATACAGGGAAGGAGGCATCTGAGACAGGCTTGGGAGATACGTCTGCAGTGTCCCCTACTCCTCAGAAGGAAGAACTGCTGGTGGATGTAAGGACCGAGACGGAGACGGCGATGATGGACAAGTCTAAACTACTATTAGCATCTCAGGTAACGGAGCTGACGCTGAGGCTTCAGTTGGCTGAGGACCgactgagggaggaggaggcgaGGGAGGCCGAGGTCAGGACCACCAATGCCCTGTTGAGAAAAAGGGCGGCCAAGCTGCTAGAGCAGATGACGGAGCTGACTCTCAACTATGTTAGTGGGATGACGGAGTTGATCGAGATGGAACTGCGTCCCAGTGAGGAGAGCATGGGCGGACGTGTGTGCCAAGCCTCTGAGCTCAGGGAGAAGTTGAGGGAGGCCCAGCTCCGAGCCAAATCACTCCTGACCGACCAAGACAGTGGGGTGTTCAGTGACGGGCTTCAGGCGGAACAACCGCACATCATGAGGCTGATGGTCCAGAAACCTCTAGAGTTGGACAACAAGTCAAAAGTGAACCCGGGCCGTGCTTGCGCTGAGCTGGAACGGAGGAGTGCGGAGTTAAGGGCAGGAGTCGGGGCGGCTCAGCGCTCTCTGCGCTGCGTCCTCAACCCCTCAGAGGTGACCTTTGACCTAGACACGGCCCACCCCAGCCTGGTCCTGTCAGAGGACCTGAAGACGGTGACCTTCAGCACCAAAAAGCAGCCCTACCCGGCCCTGCCAACAAGGTTCAGTAGCTTCCTCCAGGTTCTGAGCACTCAGAGCTTTTGGGGAGGCGAGCATCGCTGGGAGGTGGAGCTGGACGGATATTCTCTGTGGATAATTGGGGTGTGCTACAGCGAGGCGGTAGCACGCAGCGGGCTAACAAGCGCCCTGGAGAGCAGCCAGGGCTCCTGGTGCCTGATGTGGTTCAACAACCTGCTGAGGGCCTTCGAGCAGAGCCATGACATCCCCCTGAAGAGAACCCTGGCAGTACACAGACTGGAGATCACGTTGAGCTATAACATCAGCCAATGCAGTGGGAAGACTCACGTGTATACCTTTAAGGCGAACCTCAATGAGCCGGTGCATCTGGCCTATAGGATGATGTCAGGCCAACCGAAGGCACACATAAAAGTATGCTCCTGAACTGTCATTGGAACAAAAGAGAACCACATACAAGATTACATTGACTCTTGTTTTTATTAATCCTGTATTCATATCAAACTTTTTTGTTATTTACATGTAATTGTGTTTCAAGTGTTTGTGGGAACAGAGGTGTTTTGGTCTGTGAATGACAGTAAAGAGAAAGAGTTCTGGTTTACATCGAATGACACATGACCCTTTGGTAGCGTAGGCCTCATTGAAATGACCAAATATATTGATTTCCCAACATGATTTACAAATCTCCAACAAATATgcccttgttcttcaatgaatgtATGTTTTTGTCAATAAAGAAACGGTTTGGGACAATAAATTGATGATACGTCAAACCAATGACTGTATACAGTTGCTAGTAAAAGCCtacacagtcttcacattttgttgcCTTAAAATTAAATCTCCGAAGAGAATACATTTCACATTTTTCCTACCGATCTACACAACCAACTCCACATTTCCAAAGTTAAAGAATAATTCTAGAAT

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568609.2 False 2138 mRNA 0.50 2 46353930 46361034
XM_021568610.2 True 2693 mRNA 0.48 2 46354786 46361034

Neighbor

gene id symbol gene type direction distance location
LOC110493972 LOC106565215 coding upstream 7772 46302413 ~ 46346158 (+)
LOC110493971 NA coding upstream 75963 46275807 ~ 46278239 (+)
LOC110493969 LOC106565220 coding upstream 100973 46243761 ~ 46252957 (+)
dlgap4b LOC106565221 coding upstream 114548 46164478 ~ 46239382 (+)
LOC110493964 LOC106565225 coding upstream 526886 45753769 ~ 45827044 (+)
tpra1 tpra1 coding downstream 1998 46363032 ~ 46375987 (+)
LOC110493975 chchd6 coding downstream 15226 46376260 ~ 46436526 (+)
LOC110493976 plxna1 coding downstream 151644 46512678 ~ 46802202 (+)
LOC110493980 LOC106565205 coding downstream 748689 47109723 ~ 47134585 (+)
LOC110493981 cytl1 coding downstream 774130 47135164 ~ 47136870 (+)
G1455131 NA non-coding upstream 56210 46297509 ~ 46297720 (+)
G1455069 NA non-coding upstream 157920 46195795 ~ 46196010 (+)
G1455068 NA non-coding upstream 159334 46194377 ~ 46194596 (+)
G1455067 NA non-coding upstream 159722 46193860 ~ 46194208 (+)
G1455166 NA non-coding downstream 20928 46381962 ~ 46386611 (+)
G1455191 NA non-coding downstream 64379 46425413 ~ 46461287 (+)
G1455669 NA non-coding downstream 102352 46463386 ~ 46463600 (+)
G1455679 NA non-coding downstream 108169 46469203 ~ 46469462 (+)
G1455800 NA non-coding downstream 238974 46600008 ~ 46600165 (+)
G1454824 NA other upstream 495429 45856249 ~ 45858501 (+)
G1454127 NA other upstream 1017407 45335294 ~ 45336523 (+)
G1454049 NA other upstream 1094359 45258475 ~ 45259571 (+)
G1453914 NA other upstream 1283005 45069971 ~ 45070925 (+)
G1453889 NA other upstream 1302925 45050729 ~ 45051005 (+)
G1456570 NA other downstream 867185 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 1444324 47805358 ~ 47807518 (+)
G1456969 NA other downstream 1472546 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 1669880 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 2028048 48389082 ~ 48424478 (+)

Expression


Co-expression Network