tpra1 (tpra1)


Basic Information

Item Value
gene id tpra1
gene name tpra1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46363032 ~ 46375987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568611.2
GAATTAGCCCAGTGTTTACCCCATCCCTAAACTGTAGCACACGGATATCGTCATACCTCCCTCTGATGCACATGCGCAAAGATTGATATCGAAATTAAAATCCGGTTTGTCAGGTGACTAGCTAGCTTGGATAAATTATTAATTAAACAGTAGACAACAGTATGATAGGTTAGCTAGTTATGTTGCTTGCACCAAAAGTATTGTCCGTGAAAAGTGCTGAAGAATATACAACTTGCCCTTGAATTCGATACTACTGAAACGGCCTTGAGTACATTATGCTTGACACCGTGACTGCAGTGGTGAGGTTTGCACAATACAATGGCAGCATATTCCCAACTTATGTGGAGAACACATCAGCAATTCCAACCTGGCAAACAGAGTTTGAGGCCAACATCACCAAGCCTCACAGATGTCTCCAGGTCCTATACGAGGACATTGGCGAGTCGAGAGTTCGGTTTTGGGACCTCGTGCTCCTCATTCCCAATGTGGCTTTCTTCATGTTCCTGATGTGGAAACTGCCCTCAGCCAGGGCCAAGATCCGGCTCACCTCCAGCCCCATCTTCATCACCTTCTACATACTGGTGTTTGTGGTGGCAGCGGTGGGAATCACCCGTGCCATAGTGTCCATGACCGTTAGTGCATCCAGTGCTGCCACCATCATTGACAAGGTGCTGTGGGAGATCACCCGCTTCTTTCTGCTAGCCATTGAGCTCAGTGTGATTATCTTGGGACTGGCTTTTGGCCACCTGGAGAGCAAGTCCAGTATAAAGCGTGTGCTGGCAATCACTGCTGTTCTGGCACTGGGTTACTCCATCACACAGGGCACCCTGGAGATCCTGTACCCTGACAAGCACCTTTCCGCCGAGGATTTCAATATCTACGGCCACGGGGGACGCCACTTCTGGTTGGCCAGCTCCTGTTTCTTCTTCCTGGTGTACTCTCTGATTGTCATCCTTCCCAAAACCCCGGTGAGGGAGAGGATATCCCTGCCATCTAAGAAGAGTTTCTATGTGTATGCTGCTGTCCTGTCCCTGCTCAATCTGGTCCAGGGCCTGGGCAGCGCCCTGCTGTGTGCCGGCATCATAGAGGGGCTCTGCTGCGTGGACGTCACCaccttcctctacttctctgtgTTCGCCCCGCTCATCTACGTCACCTTCCTCAAAGGCTTCTTCGGctcAGAGCCCAAGATCCTCTTCTCCTACAAGTGCCAGGTGGACGAGCCGGACGACCAGGCAGACGTCCACCTGCCCCCCACCTCGACATCTGGTCTGGGCCGCAAGGAGCAGCTGGAGCAAGGCTCCTTCTACTCCAGCACTCAGATAGACGGCCTGACTGCCACCGGCATGGCTGCCTACCTGGACGACGTGGCCTCTGGTCCTTTTGGGGCGGGCAGCATCAACAGCATCGACAGCGACCGCTGGAGGGCCATCAACGCCTAAGGAAAAAgatgaaaggaaaggaaaggggaggTTAGGGGATGTATGCTAAGCTAGTAGGAGAGTGCTAGTAGGACTGGTTAAGTGGAGAgtagtgagaggagggggggggggtggaggctctctctctctctctctggagaaacTGTGAGGAGGGCCCTCATTGAGGAAGCTGCTCCCCCATTTCAGCTCCTGTTTGTCCTCCATGTCCTTCATTTTGGCTCTTGCTGCCTGCTCCATTCTGGCTCAAACATTACATTCTTCCCAATACCTGCCTGGGATTTTTCCACAACTTCAGTCAAGTATTATCCCCCCAGTAATTGAGTGCGTGGGCAACAAAGCTAAGAAGCAAATGTTCTTTGTTAAGTGTAAAGGTAATGTCCGTTACATTCCCATCGAAGGGTTACAGCTCAGTGAGGTAAAGTCCACGAACTGTGGCTTTGTGTTAGATTTGTGACTACTTGGTAACCAGGTCGTATTGAATCACCAATTCGCCGTGCCTTGCTCCCTATAGACCAGACCTGTCCTTATCACGCTAGGCCCCTTCTCTAAATTGCGTCATTCGTAATGTTTTATGTTTGAAATCAGTGCTTCTTTTCCCCAGTCTTTGATGTTTGACGTAATGTCATGTACCCTCATTGTATTAATTGAGGACCTCGGGCTTGAGTCTGCAGGAGCTTGGTATGCCTTGTCAAAGACCATTATTAGTGCATCTGGTATCCATGTGATTTGCTGCTGGGGCATAGAGAGAATCAAAATGGATGCTGAGTCGCACCCGTCATCTCTACCTATTTTATGTTATTATTTActgtctgttttatttattttagtgaCCGCTCGGTTTTATGTCGAAAGGTAGTTCCATCAGCTGATTAATCCTGGTATAAGAAATGTTTCTAATAAGTAAAGCAACATTTACAAACCCACACGTCAAATGAGGGCGAGAGAAGGCAGGAATAGCACTTGTGGTTAGGCTATGTCTTTTTcagactttttatttttatttcaagaAATATTCATCCCAAGATGCATTGGATTCGACTGAAAAGAAACGGAGAAAAACAAaggtcattttttttttatgactcAAATATGAACTAATATTGAAATGTAATTTTCAATATATGAAATTATTGAATTGGCCACCTTAGGTTGCTCATGTGCTCTTTAAAACGTAAGCCCTGATTTCATCACAAAGAAAGAGCAACTTTAAACACTAAATCTGTTTGCTGATAATGCTCAATGCGAACTGGACCAATTTGCATGAAGCACTACTTCCTTGCAGTAATTCTACTTTGTCTGCTGTGAACTTAGTAGCCCCACAACACATGGCTTGCTGTGAAACCAGTTCCATTGTTTATGCCCCCCTTGTGATTTTGTCACTTATATTCATTCCCCCACCTGGAATGGTGTACATTTGGCATGGTAAAACATTGTCTTGAGTGGAGTTCGTCGTGTGACATATGGCATCAGTATGTCATATAGAGACACGTTTATTTTTTCATAAATGTAAGCCACCACAAAGCAAGTGTTTTTGTATTGCCATAGTAGTATATTATGAGTCTTCTGCCTTGCACGTCCCAATACTTGACCTGCATCAACAAAGGAAACCCGGGAAATGTTGTACGGTTGCATTTGAGGGTCAACATTATTGATGAAAAATGGAGTATATTTATAAGGTGTTAGTGGGGTGTGGGTTTCAAATGCAAGTGTTGGCAGGCTACATAAGATAGAATTCaatatttaattgaaatgactTTGAAAAAGAGTAAGGATACTCAGTGCCAGCAAGCTGTGAATAACTTGTAATTGTATTTAATAATGTATCATTGTAGAATATTCAACTCCTATGTTGTGTTGAGGATTCCATGAGACAATTAAACCTGCTTCCTTTTCATTCCTATACA

Function

symbol description
tpra1 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TPRA1 (transmembrane protein adipocyte associated 1).

NR:

description
PREDICTED: transmembrane protein adipocyte-associated 1 isoform X1

GO: NA

KEGG:

id description
K22988 TPRA1, GPR175; transmembrane protein adipocyte-associated 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568611.2 True 3346 mRNA 0.46 11 46363032 46375987

Neighbor

gene id symbol gene type direction distance location
LOC110493973 LOC106565216 coding upstream 1998 46353930 ~ 46361034 (+)
LOC110493972 LOC106565215 coding upstream 16874 46302413 ~ 46346158 (+)
LOC110493971 NA coding upstream 85065 46275807 ~ 46278239 (+)
LOC110493969 LOC106565220 coding upstream 110075 46243761 ~ 46252957 (+)
dlgap4b LOC106565221 coding upstream 123650 46164478 ~ 46239382 (+)
LOC110493975 chchd6 coding downstream 273 46376260 ~ 46436526 (+)
LOC110493976 plxna1 coding downstream 136691 46512678 ~ 46802202 (+)
LOC110493980 LOC106565205 coding downstream 733736 47109723 ~ 47134585 (+)
LOC110493981 cytl1 coding downstream 759177 47135164 ~ 47136870 (+)
LOC110493983 LOC106565202 coding downstream 910940 47286927 ~ 47308189 (+)
G1455131 NA non-coding upstream 65312 46297509 ~ 46297720 (+)
G1455069 NA non-coding upstream 167022 46195795 ~ 46196010 (+)
G1455068 NA non-coding upstream 168436 46194377 ~ 46194596 (+)
G1455067 NA non-coding upstream 168824 46193860 ~ 46194208 (+)
G1455166 NA non-coding downstream 5975 46381962 ~ 46386611 (+)
G1455191 NA non-coding downstream 49426 46425413 ~ 46461287 (+)
G1455669 NA non-coding downstream 87399 46463386 ~ 46463600 (+)
G1455679 NA non-coding downstream 93216 46469203 ~ 46469462 (+)
G1455800 NA non-coding downstream 224021 46600008 ~ 46600165 (+)
G1454824 NA other upstream 504531 45856249 ~ 45858501 (+)
G1454127 NA other upstream 1026509 45335294 ~ 45336523 (+)
G1454049 NA other upstream 1103461 45258475 ~ 45259571 (+)
G1453914 NA other upstream 1292107 45069971 ~ 45070925 (+)
G1453889 NA other upstream 1312027 45050729 ~ 45051005 (+)
G1456570 NA other downstream 852232 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 1429371 47805358 ~ 47807518 (+)
G1456969 NA other downstream 1457593 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 1654927 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 2013095 48389082 ~ 48424478 (+)

Expression


Co-expression Network