LOC110493978 (LOC106565208)


Basic Information

Item Value
gene id LOC110493978
gene name LOC106565208
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47045676 ~ 47051528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949989.1
agttcatctGTTGCACCCCatcagaaaccaaaatataaacttgttttactccaGTGTTTGTTAACAATGTAAATGTTAATAAACACTGTATAGCCATAAAACATGCATGGTTAAAACTATTAtttttatatcatggatggtcagtccttgcatccatagctctgtctatgaatttgagagtggttacatttctccaagcCTATCcatcagctgtttaccaaaacagaggaggGGTGGCAGCTTTGTTAATGTGTAATTTTTTTACTCAGTGTTATTCAAGTGGTAATACATTTGTGGTAATACATACATTTTCTTATGATTTATTTTCAACCACATCCCCTGTTGATTTTGTTGTTAATTTGAAGGTGATATTGGGTCATGGCCAGTCTGCAGCAGGAGTACCCCCTGGTCCTGCTGGGGATTCTGGAGGAGCTGGCTGCTATGCGCCCCTGGCTTTCCTTTCAGGACCTGTGTAGAATGGTCAGCACCCGCTTCGACCTGCAGCACCTCACAGAGCTTAGGAGCCTGCTGTTCTCCGCAGCCTGCCGCGATCCCTGTTTCCCCGCCACCCTCTTCAGAGACAGGGTCAACCCTAAGGGACTGGGGACATCCCCGATTGGCGTGGCAGCTGACATCGTCACAATATTCAACCTCATTCAAATGACGGGTGGGGTTCCTGAAGAGGCCCAGGCGGCCCAGCCAATGAAAGCTCAGCTCGGCCCCAATATCGACCAATCCCCGGGGCCCTCTTTGCAAATTTCTTTGCCCATCGCTGACGAGGTGAGATTCTCCAGCCGCGATAGGGTGCGCACACTGTCAGACTCTCAGACCCTCTCAGGCCCTATCGACCAGAGCTTGCTCTGGCCCAAAGCAAATTACTCGTTCCTCAAGCGTGCCAGTCTCCCTCCTgatcccctctctctggtctcgtcATCCCCTCCAGGCCGTGCCAGGGCTGTGTCTTTCGACTGGCGCCACAACACCCCGCTGTTCGCTGGCAGTGGAAGCATCCCAGGCCAGGCCATGCAGAGCATCTACCTCCCCCTGGAGACAGACAGCGAGTCCTCAAAGGATTCCCTGAGTGGAGACTCGGCACCCAGGGATCCCGGATCAGAGCCGGGATCGCAGCCGGGATCGGAGCGGCATTCCTGCACGAAGAAGAGAGGTATTTTCAAGATGGACTTCCACAACCAGTCGCACCTCGTTCCCGAGGTGACCATTAGTACCGTGACTCcaagagtaggaggaggaggaagagggaggcagGAACTTTTCACCAATCGCAGCTTCGAGATGCTCTCCAACCCGTATCCTTCGCCCATGGTCGGTCGGCCTTCGCCTGGAAAAAATGAAAGCCTGGATGACCTCCAGGACTCCACATACTTTGGCCCAGGGGGTACTATTCCTGAATggtcccccctccacccccaaccCCCCAGGACCCGTAGGCCAGGATGGACGGACAAGAGCCTCAGTCTGGATGACAGGTTGGTCGGCTTGGATGGCTCCGAGGGCTCCCTTCAGAGGAGACTTGCTCCCAGCCCCACCACAAACTCTGGTGAGTGGTTGCCCCTTTTAAAGGGATGGGAGGGGACCGTCAGTCCCAGACCTGAAGGAGAAGGGTGGATGGCCTGCAGTACGGGCACCCAGACAGACACCATGCCGGGCACGCGGCACCTGCGGAGCCTGGTGCACGCCGACCACCTGTCCTTCATGACCTCGATGGACAACCCCGACATGCTAGGTGAGGACGACATCAGCACCATCTTCCGCTTCCTGGATGACATGAGCATGTGCGGCTCCACAGGGTACATCTGCCCCCCCGACGGGGGCCCTTCGGCAGCCCAGGACACCCCGGAGGCGCGGCGCGGCCGCCTGGGCCAGCTCCAGAGGCTCTTCCATTCGCTGGACGGCAGTGACGATGGCGGGCTCAAGGCAAGCGTGTGTAAACTCCTCCTGAGAATGGGTCAGATCGAACAGAGCCTGGAGTCCCTGTCCGAGGTCAAGGCCGAGATCTCCCAGGTGCTCTCCTTCCTCCAGCGGCTGGACGAGAAGATGCAAGAGCAGGCCGTGGGAGGTACACGGGGAGGTAGGTGGCTGGGACCCCCCAGCGGCGGTGAGTCTTCCCTGGGTGTGCTAAGCCATCCGCTCAGCCCTGGGTCTGGTGGTTCCTCTGAGCCCCAgcctctgtctgtatctgtgcaTTCGTTTGGTAGCCTGGACTGGAACCGGTgggggaagatggaggagaacagaggtgTGAGCGAAAGCAAAGTGGGGAAGAAGGTGCTCTCTCGGCAGGCCTCTTGCAAGAGTGGCGTGGACTCCAAGCGGCCAAGCATCATCTCCATCTTGTCTGCACGGGATTGGACGGTGTCTTTCTCGAAAAGTAAAGATGACAAGGACCAGCCTGGGAAAACAGGACAGACGGACCAATCAAACAGCTCTGCCCAGAGTCACAAACTCCCTCCTCAAAAACACTCCCACTTGGTGGAGCAGGTGTCCAACTCTTCTCTCTTCCATCAGAAGGGTGGCGGTTTGACCAATCCAGGGTTGTCCTCTGGGTTGACCTCTggtttgacctctgacctccgaTTGGCTGAGGGGAGAGGAGCCCCGGTCTGGAccgtggaggagagagaggccagaATGTCCCCTCTGGACCtacagGCCCAGGAGTCTCTAAACCCTAATAACCTGGAGTTTTGGATGGAGGACATCTACACGCCAGGTTACAGCACACTGCTGAGGCGCAAAGAGGCCAACCAGCGCAGAGCCAAAGCCTGCAAGCTGGGGGCGCTCATCTTCACTTCCATCACCATCATCCTCGTCATCGTCATCCCTATCGCCACCATGAGCTCCTGAGGCTCTGTATGCATGCCAGACAGGAGACCTCCAAACAAAAATACTGATTTGATTTGTTGATTGGCGACGACGGGATGGTGGGATTCTgaatgtggtgttgatgtgatacATTTATGGGAGTAATGTGCCCTACATTTACCATGCTCTTGCACCAGTGTACTCAGGAGAGAGTATTAAGGAAAGACCAAGCTAAACGAATGCAAATTCTTTGTGAATCTGGCGCCATGCTATTACAATCTGTTATGGCCTTATCCTGTTGCCCACATACCTTACTGGGCTAATTTCTTTCAAGCACACATTTAAAAAATGCATAACAGTAAAAAGCACAGCATttaggtaggcctactgtctgcCATTATTTCTCATTAAGTTATGTTGAATAAAATATTGATTTGTCATAATGGTTTTCGCTCAGTGATTTCCTCTATATTTTACTGGCTATGTGTCAATGCAGTCTTTTGATGAGAAACCTCCTCTgtttgttgatgttgatgttgatgttttgGTGCCAGAGGAATATGGAAAAGGAAGCCTTTGCCAGGAACCACTTTGTGAATTGAGGATTCCATGTGTAATCTAATTTATGTTATACCACTCTACCATGttagtgtactgtatgtacgcagaaacacacacgcacacacacacatatgcatgtgCATGCACACGTGCAtgaatgcgcgcacacacacacacacatcacattgaCACACACTACATACAATCACAGCCAAAATTCCTATGATGTGATTGTCAAGGGATATGCAGTATTACTGGTTCTGTCACATTTCACTTAGGAAGAATGTCTATGTTGTAGTTGAATGTACTAGTGCTACTAGTACTGAGGTCACCTGGGGTTAGGGCTGATGGTTCACAATATGGAGAGTGTCGCAGTGCTTTGGAGGGTGATGTGAAAATGTAAGGCCAAAGTTTGTTTTGCTGTGCTGGCATTGCAGCAGACCCTGAGCCCtcaccaacccacacacacacaggatgttcattgtgtgggggtggggggaggggtcGGATCCATGCATTGCTTCCTCTTAAGTGGATGTGTGTCGACTAAGTGATCCCCTCGAGTCTAGTTGCAGATCCATTACTGCTGTTGTGTTGGTGCCACAGGAAAGCCCTAACCATGTACTCAGCACAACGCTGACAGCCTGTGGGGATTCAGTAATGCTAATGACCCAGAACTTCTCCACAACACTGGATCCCAAACTTAGTTTTCAGGACCCATC

Function

NR:

description
UPF0258 protein KIAA1024-like

GO: NA

KEGG:

id description
K24829 MINAR1; major intrinsically disordered Notch2-binding receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949989.1 True 4106 mRNA 0.52 3 47045676 47051528
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493977 LOC106565211 coding downstream 2708 47032812 ~ 47042968 (-)
LOC118940469 NA coding downstream 555816 46484175 ~ 46489860 (-)
LOC110493970 LOC106565219 coding downstream 775151 46256315 ~ 46270525 (-)
LOC110493958 LOC106565223 coding downstream 1104263 45889914 ~ 45941413 (-)
LOC110493959 LOC106565224 coding downstream 1163245 45860705 ~ 45882431 (-)
LOC110493979 LOC106565206 coding upstream 40187 47091715 ~ 47109669 (-)
LOC110493982 LOC106565204 coding upstream 107442 47158970 ~ 47160906 (-)
LOC110493984 LOC106565203 coding upstream 256913 47308441 ~ 47318052 (-)
slc2a9l2 slc2a9 coding upstream 420596 47472124 ~ 47696126 (-)
LOC110493991 LOC106565198 coding upstream 659246 47710774 ~ 47724598 (-)
G1456399 NA non-coding downstream 61307 46977096 ~ 46984369 (-)
G1456150 NA non-coding downstream 142569 46902861 ~ 46903107 (-)
G1456134 NA non-coding downstream 163393 46879038 ~ 46882283 (-)
G1455859 NA non-coding downstream 381117 46664332 ~ 46664559 (-)
G1455858 NA non-coding downstream 382006 46663448 ~ 46663670 (-)
G1456467 NA non-coding upstream 25006 47076534 ~ 47076784 (-)
G1456469 NA non-coding upstream 27650 47079178 ~ 47079425 (-)
G1456424 NA non-coding upstream 37402 47088930 ~ 47089572 (-)
G1456471 NA non-coding upstream 40832 47092360 ~ 47092576 (-)
G1456479 NA non-coding upstream 50564 47102092 ~ 47102423 (-)
G1455801 NA other downstream 449357 46595488 ~ 46596319 (-)
G1455240 NA other downstream 1277805 45766912 ~ 45767871 (-)
G1454487 LOC106572750 other downstream 1472965 45518826 ~ 45572711 (-)
G1454346 NA other downstream 1822604 45222779 ~ 45223072 (-)
LOC110493937 LOC106565242 other downstream 2290511 44752248 ~ 44755352 (-)
G1458499 NA other upstream 1812976 48864504 ~ 48865365 (-)
G1459296 NA other upstream 2610023 49661551 ~ 49661921 (-)
G1459333 LOC106584726 other upstream 2675824 49727352 ~ 49766069 (-)
LOC110494969 LOC106584726 other upstream 2904986 49953456 ~ 49964331 (-)
G1459325 LOC106565145 other upstream 2940035 49991563 ~ 50035512 (-)

Expression

LOC110493978(LOC106565208) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
End of interactive chart.

LOC110493978(LOC106565208) Expression in each Bioproject

Bar chart with 17 bars.
LOC110493978(LOC106565208) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network