LOC110493981 (cytl1)


Basic Information

Item Value
gene id LOC110493981
gene name cytl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47135164 ~ 47136870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568624.2
TTTTGATAGTGACATGTGGATTGTTACAGCATGGGATGATACACTTTGTTGTCATCCTGAAGGATGTTGATAGCTGGAAGAAATGTCACGTTTCCAAAATGCACAGGAGCGCGTAATAAGTTTAATTTCCAGTTATGTTGCGCTTAGTGAATCTTCGACGTCACCATCTCTTTTTTTGTCACTCCCAACTACAAACTGCAAAGTTGCTCGACAAAGAACACACTCGTTTTGTAAAGCCCAAGCGTAGTTGCCTCTACAGAAGAATACTTTTTTTAACCGACGCAACAACGGGTAGAAAGATGAGACTCGCACCtttcttgtgtttcttcagttttATTTGGTTGGCAGATTGTGCACCACCGACATGCTATTCCCGAGTGCTTGGCTTGAGCAAGGAAATAATGGACCTTTTGGAAAAACTACACAATTATCATCTCACGAAAACCTGCGTGGAGATTCTGCCCAAGATGTTTCTGGATGTGCACAATTCGTGCATCGTGACCAAGCTCCGTGACTTCCTCTATGTTGTGGAGAACCTTCCTACACAGTACTGCAGAGAGCGTCCCAGGATCGCGTTGTTGAAGCGCAAAGTCAACAACCTGTACACAATTATCAACCGAATCTGTTATCGGGACCTAGTGTATTTCACAGATGACTGTGAGGccattgagactggacagagtacCCCTCGCTACGGAGAGGACAGGCTCCAGCTGCTGGTGGAAGAGAAGAGATGAGCCCATCCAGAGACAAACACACTCACGCTCACATGTGCAAACAGCgcacgtctcacacacacacacacacacacacaggaatggaTGTGTGAGGGTATGTAAACCCTGTTTCACTCaaaatcacatacacacacacataca

Function

symbol description
cytl1 Predicted to enable signaling receptor binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including cartilage homeostasis; chondroitin sulfate proteoglycan biosynthetic process; and positive regulation of DNA-binding transcription factor activity. Predicted to be located in extracellular space.

NR:

description
cytokine-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568624.2 True 878 mRNA 0.45 4 47135164 47136870

Neighbor

gene id symbol gene type direction distance location
LOC110493980 LOC106565205 coding upstream 579 47109723 ~ 47134585 (+)
LOC110493976 plxna1 coding upstream 332962 46512678 ~ 46802202 (+)
LOC110493975 chchd6 coding upstream 698638 46376260 ~ 46436526 (+)
tpra1 tpra1 coding upstream 759177 46363032 ~ 46375987 (+)
LOC110493973 LOC106565216 coding upstream 774130 46353930 ~ 46361034 (+)
LOC110493983 LOC106565202 coding downstream 150057 47286927 ~ 47308189 (+)
lyar lyar coding downstream 191432 47328302 ~ 47341231 (+)
LOC110493987 LOC106565200 coding downstream 215362 47352232 ~ 47361786 (+)
otop1 LOC106565199 coding downstream 228201 47365071 ~ 47372581 (+)
LOC110493989 LOC106565315 coding downstream 237766 47374636 ~ 47376700 (+)
G1456293 NA non-coding upstream 35999 47098965 ~ 47099165 (+)
G1456291 NA non-coding upstream 38698 47096244 ~ 47096466 (+)
G1456290 NA non-coding upstream 39819 47095139 ~ 47095345 (+)
G1456287 NA non-coding upstream 44953 47089919 ~ 47090211 (+)
G1456286 NA non-coding upstream 49572 47083967 ~ 47085592 (+)
G1456539 NA non-coding downstream 62507 47199377 ~ 47199585 (+)
G1456597 NA non-coding downstream 110006 47246876 ~ 47247152 (+)
G1456668 NA non-coding downstream 235819 47372689 ~ 47372813 (+)
G1456670 NA non-coding downstream 239912 47376782 ~ 47378517 (+)
G1454824 NA other upstream 1276663 45856249 ~ 45858501 (+)
G1454127 NA other upstream 1798641 45335294 ~ 45336523 (+)
G1454049 NA other upstream 1875593 45258475 ~ 45259571 (+)
G1453914 NA other upstream 2064239 45069971 ~ 45070925 (+)
G1453889 NA other upstream 2084159 45050729 ~ 45051005 (+)
G1456570 NA other downstream 91349 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 668488 47805358 ~ 47807518 (+)
G1456969 NA other downstream 696710 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 894044 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 1252212 48389082 ~ 48424478 (+)

Expression


Co-expression Network