LOC110493983 (LOC106565202)


Basic Information

Item Value
gene id LOC110493983
gene name LOC106565202
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47286927 ~ 47308189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568627.2
GAACGCACCCATACGTCGCAAAAATATGACGTTGAATGTGGTGACGTGTCGCTGTTGACAGTGGCGTGTGCTGCCGTGCTACTGACAGAAATGGCTGTTGATATAACTGTACTGTTCAAAGCCAGTGTCAAAACGGTAAAAACACGAAATAAAGCTATCGGAGTAGGGTTTGATTTGCCTAAAGATGAAATCTTCAAGAAGAGCAGACCCAAACATGGATTTTCTCTCAAGGCGAAGGAAGTGATCTCCAACATCACCAAGCTGAAAGACTTTCTGCTGCAGCACAGGAAGGACTATGTGAATGCTGGAAGTCTCATCTCGTCAGACCTAACCCGGATGACAGACAATGAGCGAGACCAGATCGACCAGGACGCCCAGATCTTCATGAGAACCTGCTCTGAGGCCATCAAGCAGCTCCgctctgaagCCGAGAAGCAGGTCATACCGACACAGATCAGAGAGCACAGGGGGGCGGTCCTCGACCTCGTCGAGATATATTTGAGAGGAGTATGCAAGCTTTACTCCGAGCAGAGGGCTATAAGAGTGAAGAGAGTGGTGGACAAGAAGAGACTGTCCAGACTAGAGCCAGAGCACCACCACAGTAGGGTGGCGGTAGAGCGAAGCTCACCGGCGGAGCAGCACAGCGAGGAGAAAACCGCTAAGGAGGAGAGCAGCAGCGGTGGTGAGCGGAGCGTGACGGAGGTACCGGAGAACAACGTGAGCCTGTGGGAGGAGGGCCAGGGCCGTGTGGAGGACGAGCTCTCGCCTGAGGAGATGCAGATGTTTGAACAAGAGAACCAGAGGCTGGTGAGTGAGATGAGCAACCTAGTAGATGAAGTCAGGCAAATCGAGGGCAAGGTCGTCGAGATCTCGCGACTCCAGGAGATCTTTGCGGAGAAGGTGCTAATGCAAGAAACTGATATCGACAGTATCCATCAGCTAGTTGTGGGAGCCACTGAAAACGTTAAAGAGGGAAACGAGGACATCCGAGAGGCCATCAAAAACAATGCTGGATTCCGTGTCTGGATCCTCTTCTTCCTTGTCATGTGCTCCTTCTCTCTGCTCTTCCTGGACTGGTACGACAGCTAACCCCCTGAACCTGGCAGAACCAGGAAGTGACATCAGCCCGGGCCTAGCCCTTCACATTGAAGTATATGGTTGGATGGACAGTGTTGGGTCTAGGACCAGCTTTTCCTAAACCCACCCCCCAGAAAACTGACCCCAGACCAGTGCTTTGATGATGACTTCACTACATGTCAACCGTAATTGAGCCACTAGAAGTCAGTGTAAATGCATGTTACTATGTAACTCTTCCTGTTCAGCAAAGCACGCTTTTGGCCGAATACAAAGTGCTGTCATCCACCTGCACTGTGTATATATGGGCAGTCGGTATCGCATACATACTGACCACTATGCTTGTTATTGCATCAACAGCAACTGTCCTCTGCTGTCTTTCTCAAAAGAAGGAAGTGGTTTCTGAACTATTAGTCTTTCTGTATTGAGATCTTGATATTGTGTACTTATGCTTTGTTGAGatgaagaaaatgtttttttaaacccTTGTGGTCTTTCATATGTATTTATTTCAATGGTATGTACACATTTAGAAGATATgagataattaagcaataaggcccgatgGGGTGTgggatatggccaatataccacggctaatggctgttcttatccacggcgcaacgcggagtgcctggatacagcccttagctgtggtatattttGTCATACCACAGCTTTCAGGGCTCAAACCCCCCGGCTAATAATTACTAATATACCATGAGTTAAGGCTAAGCTTTTGCAGATGGGatattttcatgaatagttattGAGTTACAATGAGCGTGTAAGCCTTTTGTTTGTGTGAAGATGGTGGTTATGATCAATCAATGGGAGTATTTGTGTTGGTATAACTTCACATTGCACCTTACACTGCTTGTGTAAAAACCTGGTCCGATCaccaataaaatgaatcactacttatg
>XR_002469224.2
GAACGCACCCATACGTCGCAAAAATATGACGTTGAATGTGGTGACGTGTCGCTGTTGACAGTGGCGTGTGCTGCCGTGCTACTGACAGAAATGGCTGTTGATATAACTGTACTGTTCAAAGCCAGTGTCAAAACGGTAAAAACACGAAATAAAGCTATCGGAGTAGGGTTTGATTTGCCTAAAGATGAAATCTTCAAGAAGAGCAGACCCAAACATGGATTTTCTCTCAAGGCGAAGGAAGTGATCTCCAACATCACCAAGCTGAAAGACTTTCTGCTGCAGCACAGGAAGGACTATGTGAATGCTGGAAGTCTCATCTCGTCAGACCTAACCCGGATGACAGACAATGAGCGAGACCAGATCGACCAGGACGCCCAGATCTTCATGAGAACCTGCTCTGAGGCCATCAAGCAGCTCCgctctgaagCCGAGAAGCAGGTCATACCGACACAGATCAGAGAGCACAGGGGGGCGGTCCTCGACCTCGTCGAGATATATTTGAGAGGAGTATGCAAGCTTTACTCCGAGCAGAGGGCTATAAGAGTGAAGAGAGTGGTGGACAAGAAGAGACTGTCCAGACTAGAGCCAGAGCACCACCACAGTAGGGTGGCGGTAGAGCGAAGCTCACCGGCGGAGCAGCACAGCGAGGAGAAAACCGCTAAGGAGGAGAGCAGCAGCGGTGGTGAGCGGAGCGTGACGGAGGTACCGGAGAACAACGTGAGCCTGTGGGAGGAGGGCCAGGGCCGTGTGGAGGACGAGCTCTCGCCTGAGGAGATGCAGATGTTTGAACAAGAGAACCAGAGGCTGGTGAGTGAGATGAGCAACCTAGTAGATGAAGTCAGGCAAATCGAGGGCAAGGTCGTCGAGATCTCGCGACTCCAGGAGATCTTTGCGGAGAAGGTGCTAATGCAAGAAACTGATATCGACAGTATCCATCAGCTAGTTGTGGGAGCCACTGAAAACGTTAAAGAGGGAAACGAGGACATCCGAGAGGCCATCAAAAACAATGCTGGATTCCGTGTCTGGATCCTCTTCTTCCTTGTCATGTGCTCCTTCTCTCTGCTCTTCCTGGACTGGTACGACAGCTAACCCCCTGAACCTGGCAGAACCAGGAAGTGACATCAGCCCGGGCCTAGCCCTTCACATTGAAGTATATGGTTGGATGGACAGTGTTGGGTCTAGGACCAGCTTTTCCTAAACCCACCCCCCAGAAAACTGACCCCAGACCAGTGCTTTGATGATGACTTCACTACATGTCAACCGTAATTGAGCCACTAGAAGTCAGTGTAAATGCATGTTACTATGTAACTCTTCCTGTTCAGCAAAGCACGCTTTTGGCCGAATACAAAGTGCTGTCATCCACCTGCACTGTGTATATATGGGCAGTCGGTATCGCATACATACTGACCACTATGCTTGTTATTGCATCAACAGCAACTGTCCTCTGCTGTCTTTCTCAAAAGAAGGAAGTGGTTTCTGAACTATTAGTCTTTCTGTATTGAGATCTTGATATTGTGTACTTATGCTTTGTTGAGatgaagaaaatgtttttttaaacccTTGTGGTCTTTCATATGTATTTATTTCAATGGTATGTACACATTTAGAAGATATgagataattaagcaataaggcccgatgGGctgtggtatattttGTCATACCACAGCTTTCAGGGCTCAAACCCCCCGGCTAATAATTACTAATATACCATGAGTTAAGGCTAAGCTTTTGCAGATGGGatattttcatgaatagttattGAGTTACAATGAGCGTGTAAGCCTTTTGTTTGTGTGAAGATGGTGGTTATGATCAATCAATGGGAGTATTTGTGTTGGTATAACTTCACATTGCACCTTACACTGCTTGTGTAAAAACCTGGTCCGATCaccaataaaatgaatcactacttatg

Function

NR:

description
syntaxin-18

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08492 STX18; syntaxin 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568627.2 False 2000 mRNA 0.47 11 47286927 47308189
XR_002469224.2 True 1918 mRNA 0.47 12 47286927 47308189

Neighbor

gene id symbol gene type direction distance location
LOC110493981 cytl1 coding upstream 150057 47135164 ~ 47136870 (+)
LOC110493980 LOC106565205 coding upstream 152342 47109723 ~ 47134585 (+)
LOC110493976 plxna1 coding upstream 484725 46512678 ~ 46802202 (+)
LOC110493975 chchd6 coding upstream 850401 46376260 ~ 46436526 (+)
tpra1 tpra1 coding upstream 910940 46363032 ~ 46375987 (+)
lyar lyar coding downstream 20113 47328302 ~ 47341231 (+)
LOC110493987 LOC106565200 coding downstream 44043 47352232 ~ 47361786 (+)
otop1 LOC106565199 coding downstream 56882 47365071 ~ 47372581 (+)
LOC110493989 LOC106565315 coding downstream 66447 47374636 ~ 47376700 (+)
idh3b LOC106565197 coding downstream 420235 47728424 ~ 47743582 (+)
G1456597 NA non-coding upstream 39775 47246876 ~ 47247152 (+)
G1456539 NA non-coding upstream 87342 47199377 ~ 47199585 (+)
G1456293 NA non-coding upstream 187762 47098965 ~ 47099165 (+)
G1456291 NA non-coding upstream 190461 47096244 ~ 47096466 (+)
G1456290 NA non-coding upstream 191582 47095139 ~ 47095345 (+)
G1456668 NA non-coding downstream 64500 47372689 ~ 47372813 (+)
G1456670 NA non-coding downstream 68593 47376782 ~ 47378517 (+)
G1456699 NA non-coding downstream 106423 47414612 ~ 47415612 (+)
G1456708 NA non-coding downstream 118066 47426255 ~ 47478036 (+)
G1456570 NA other upstream 58131 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1428426 45856249 ~ 45858501 (+)
G1454127 NA other upstream 1950404 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2027356 45258475 ~ 45259571 (+)
G1453914 NA other upstream 2216002 45069971 ~ 45070925 (+)
LOC100135862 LOC106565314 other downstream 497169 47805358 ~ 47807518 (+)
G1456969 NA other downstream 525391 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 722725 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 1080893 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 1385132 48693321 ~ 48814670 (+)

Expression


Co-expression Network