lyar (lyar)


Basic Information

Item Value
gene id lyar
gene name lyar
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47328302 ~ 47341231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568629.2
GTAAATAATGTAACACTTCCTGGCTTGAAAGAAGTCGCGTGTTTTTAAACTTTTGCACTGACGAACCTACATGGGTTTTTTCCCCCAACGTCTTTGTATTGCTACTACAGCTAATGACCTATGTAGTAGCTTCATATAATTCATATGACGCAATGTTAGTTTGAAATGCCGTTGTAACTTAGTAAGTAACAAGCTTGTTCCTTTCATGACTAGTGTAAGCTGGCTAGCCGGCTAACGTACGCTAGCTACCGCCCGGTAAGTTAGTTCAGGATTTGTTGGCCCCTGCCATGTGTCTCACTCTGTATCGATTAAAACGTAATTTGGCATAGTATATAGCAAGCAAGGCAACGTTGTCCAAAAGGAATTTGTTTTCATTGAGTTCATTGACTTGTGTTAGTTGGTAGTATTCATTGAGACTTAAAAGAACGGTAGTATCAGCTAACGTTAGTCCAACATGGTCTTCTTCACGTGCAATGCGTGTGGTGAATCACTAAAGAAAGCCCAAGTCGAAAAACATGTGAACATGTGCCGTGGATGTGAAATTTTGTCATGCATTGACTGCGGAAAAGACTTTTGGGGAAATGACTACAAGAACCACATCAAATGCATCAGCGAGGATCAGAAGTATGGAGGCAAGGGCTATGAGGCTAAGTCCAACAAAGGGGATGTCAAACAGCAACAATGGATTCAAAGGATCCAAGAAGCCATGAACAAACCAGGAATCGGTGCCAAGCTGAAAGATGTTCTAAATCAAGTCAGTTCGTATGACAATGTCCCACGAAAGAAGTCGAAGTTCCAGAACTGGATGAAGAACAGTCTGAAGATCCACAATCCCACGCTGCATGACCAGGTGTGGGACATCTTTTCAGCAGCAACCAGCAGCCTGGCTCCCGAAGCCCCGAATCAGACAGAAGAACCTAGGCAGTCTGTTGCTGAAAGCAAGACCGAGACTAATGGGAGCCATCAGAATGGCACATCGGATGAGCCACCACCAGAGAAGAAGAAGTTGAACAAGCGTGAGCGCAAAGAGGCAAGACAAAAGAAGAGCgggaagaaagaaaagaaagccCTGGAGAACGGTAGCACCGAGGAGGAGGAAGCAAGCGCAGGCAAACGAAAGGACAAGAAAAGGAAGAGGAGTTCTGAGGAAGATGGGGAGCAAAAAGGCCACGATGCTGGAGGAGAGGTGACCACCAAGAAACGGAAGACCAGTAAAAAGGACAGTTCCGAAGATGACCAAAACACAGAGGCGGCTGAGGAGGAAGCAGAGGGTGCTGCAGGAGAAGCAAGTTCCAAAGGCAAGTTCAATTGGAAAGGAACGATAAAGGCAGTCTTAAAACAATCTCCTGAAGAAGGACTTGCGGTGAAAAAACTCAGGAAGAAGGTTTTGTCAGCTTACTACTCATTCAGCGGAGAGGGGAATTTCAAATCGGAAGAGGAGCTGCTTGCACTCTTCAACAAGAAGATTAAAGGCAACCCCAAGTTTAGAGAATTAAAAGACAAAGTTAGACTTGTGAAGTAGATCATGAATTCCAGCATGGCTGTTTTAACAACTCACCGTTGTCTTCAGTGGTATGCGTGTCATCTGAAAgattaaatcatttttcaacACCAAG

Function

symbol description
lyar Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human LYAR (Ly1 antibody reactive).

NR:

description
cell growth-regulating nucleolar protein

GO: NA

KEGG:

id description
K15263 LYER; cell growth-regulating nucleolar protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568629.2 True 1616 mRNA 0.45 8 47328302 47341231

Neighbor

gene id symbol gene type direction distance location
LOC110493983 LOC106565202 coding upstream 20113 47286927 ~ 47308189 (+)
LOC110493981 cytl1 coding upstream 191432 47135164 ~ 47136870 (+)
LOC110493980 LOC106565205 coding upstream 193717 47109723 ~ 47134585 (+)
LOC110493976 plxna1 coding upstream 526100 46512678 ~ 46802202 (+)
LOC110493975 chchd6 coding upstream 891776 46376260 ~ 46436526 (+)
LOC110493987 LOC106565200 coding downstream 11001 47352232 ~ 47361786 (+)
otop1 LOC106565199 coding downstream 23840 47365071 ~ 47372581 (+)
LOC110493989 LOC106565315 coding downstream 33405 47374636 ~ 47376700 (+)
idh3b LOC106565197 coding downstream 387193 47728424 ~ 47743582 (+)
LOC110493993 LOC106565195 coding downstream 403125 47744356 ~ 47790013 (+)
G1456597 NA non-coding upstream 81150 47246876 ~ 47247152 (+)
G1456539 NA non-coding upstream 128717 47199377 ~ 47199585 (+)
G1456293 NA non-coding upstream 229137 47098965 ~ 47099165 (+)
G1456291 NA non-coding upstream 231836 47096244 ~ 47096466 (+)
G1456290 NA non-coding upstream 232957 47095139 ~ 47095345 (+)
G1456668 NA non-coding downstream 31458 47372689 ~ 47372813 (+)
G1456670 NA non-coding downstream 35551 47376782 ~ 47378517 (+)
G1456699 NA non-coding downstream 73381 47414612 ~ 47415612 (+)
G1456708 NA non-coding downstream 85024 47426255 ~ 47478036 (+)
G1456570 NA other upstream 99506 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1469801 45856249 ~ 45858501 (+)
G1454127 NA other upstream 1991779 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2068731 45258475 ~ 45259571 (+)
G1453914 NA other upstream 2257377 45069971 ~ 45070925 (+)
LOC100135862 LOC106565314 other downstream 464127 47805358 ~ 47807518 (+)
G1456969 NA other downstream 492349 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 689683 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 1047851 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 1352090 48693321 ~ 48814670 (+)

Expression


Co-expression Network