LOC110493987 (LOC106565200)


Basic Information

Item Value
gene id LOC110493987
gene name LOC106565200
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47352232 ~ 47361786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568632.2
CTTTGATTTCCCCTTGCTAGGACGGTCGCATTAAATAAACGTCACCAGCAAACTTGCGAACAGGAAGCGTTAGCCAAAGCCAGCCAGTCAAACAAGACAAACAGCCTGATATCAAACATGCTTGCTGGTAGTGATTTCGTAAATCTGCGAAATAGATTCAAGAAAGATGCTGAACTTCTTATGCAAGGGGTTTCAGCAGGTGACCGCAACGAAAAGAGTCAAGAAGAGAAAGATGCCAAACCACTCTCTCGGATCAACCGCCATTCTGTCTTCTGGATTGTGTCATCTGTTGGGTTGACGTATTATTTCGACTTCCTCCGGGTCCTCATGGAGAATGAGGATATCAAAAGCTGGTGGTTCAATCTTGGTGTGATACTGCTGGGAATATGCCTATCTTTGGCCACATTTTGTATTGTATATCTGGAGTGGTTCAAGGGCATAAAGGACTACGACCAGGAGTACCCTGCTATTGCCCCTATTACCACAGCAGCCTTCATTGCAGCATCATGCAGTTTAAATATAGCACTGTGGCCTGTGTGGTCGTTCCTCACCCCCATCCTCCTGTTTACCCAGTTCATGGGTGGTGTTATGCTCATATCCATGCTTGGGTGAGATGTTAAGTACTAAAGCCTCAACAATGACGACAGTTTGACTTTCGTGTTAACAAATTGATAATGTTCAGGAAAGTTTTTTTTTAGcgtaaatatattatatttgataagTTACCAAAGCTTTTTAAGTGCTTTAATTGTTTTTGTATATGTTTTTGAATCGTATGTGTATTTTTGAGTCACAAAGCCATTGTGCTATTAACATTGTAAATGTGTCCTGACATCCTGTCAAATCTGCTAAATAAATAATGGTTTGTAACTAAT
>XM_021568630.2
GCTAGGACGGTCGCATTAAATAAACGTCACCAGCAAACTTGCGAACAGGAAGCGTTAGCCAAAGCCAGCCAGTCAAACAAGACAAACAGCCTGATATCAAACATGCTTGCTGGTAGTGATTTCGTAAATCTGCGAAATAGATTCAAGAAAGATGCTGAACTTCTTATGCAAGGGGTTTCAGCAGGTGACCGCAACGAAAAGAGTAAGTCATGTCAAGAAGAGAAAGATGCCAAACCACTCTCTCGGATCAACCGCCATTCTGTCTTCTGGATTGTGTCATCTGTTGGGTTGACGTATTATTTCGACTTCCTCCGGGTCCTCATGGAGAATGAGGATATCAAAAGCTGGTGGTTCAATCTTGGTGTGATACTGCTGGGAATATGCCTATCTTTGGCCACATTTTGTATTGTATATCTGGAGTGGTTCAAGGGCATAAAGGACTACGACCAGGAGTACCCTGCTATTGCCCCTATTACCACAGCAGCCTTCATTGCAGCATCATGCAGTTTAAATATAGCACTGTGGCCTGTGTGGTCGTTCCTCACCCCCATCCTCCTGTTTACCCAGTTCATGGGTGGTGTTATGCTCATATCCATGCTTGGGTGAGATGTTAAGTACTAAAGCCTCAACAATGACGACAGTTTGACTTTCGTGTTAACAAATTGATAATGTTCAGGAAAGTTTTTTTTTAGcgtaaatatattatatttgataagTTACCAAAGCTTTTTAAGTGCTTTAATTGTTTTTGTATATGTTTTTGAATCGTATGTGTATTTTTGAGTCACAAAGCCATTGTGCTATTAACATTGTAAATGTGTCCTGACATCCTGTCAAATCTGCTAAATAAATAATGGTTTGTAACTAAT

Function

NR:

description
transmembrane protein 128 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568632.2 False 875 mRNA 0.41 5 47352232 47361786
XM_021568630.2 True 869 mRNA 0.41 5 47352247 47361786

Neighbor

gene id symbol gene type direction distance location
lyar lyar coding upstream 11001 47328302 ~ 47341231 (+)
LOC110493983 LOC106565202 coding upstream 44043 47286927 ~ 47308189 (+)
LOC110493981 cytl1 coding upstream 215362 47135164 ~ 47136870 (+)
LOC110493980 LOC106565205 coding upstream 217647 47109723 ~ 47134585 (+)
LOC110493976 plxna1 coding upstream 550030 46512678 ~ 46802202 (+)
otop1 LOC106565199 coding downstream 3285 47365071 ~ 47372581 (+)
LOC110493989 LOC106565315 coding downstream 12850 47374636 ~ 47376700 (+)
idh3b LOC106565197 coding downstream 366638 47728424 ~ 47743582 (+)
LOC110493993 LOC106565195 coding downstream 382570 47744356 ~ 47790013 (+)
LOC100135862 LOC106565314 coding downstream 443726 47805358 ~ 47807518 (+)
G1456597 NA non-coding upstream 105080 47246876 ~ 47247152 (+)
G1456539 NA non-coding upstream 152647 47199377 ~ 47199585 (+)
G1456293 NA non-coding upstream 253067 47098965 ~ 47099165 (+)
G1456291 NA non-coding upstream 255766 47096244 ~ 47096466 (+)
G1456290 NA non-coding upstream 256887 47095139 ~ 47095345 (+)
G1456668 NA non-coding downstream 10903 47372689 ~ 47372813 (+)
G1456670 NA non-coding downstream 14996 47376782 ~ 47378517 (+)
G1456699 NA non-coding downstream 52826 47414612 ~ 47415612 (+)
G1456708 NA non-coding downstream 64469 47426255 ~ 47478036 (+)
G1456570 NA other upstream 123436 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1493731 45856249 ~ 45858501 (+)
G1454127 NA other upstream 2015709 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2092661 45258475 ~ 45259571 (+)
G1453914 NA other upstream 2281307 45069971 ~ 45070925 (+)
G1456969 NA other downstream 471794 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 669128 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 1027296 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 1331535 48693321 ~ 48814670 (+)

Expression


Co-expression Network