otop1 (LOC106565199)


Basic Information

Item Value
gene id otop1
gene name LOC106565199
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47365071 ~ 47372581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568634.2
TTAATTTTGACTTTACTTATATCCCCctcacataaaaaaaacaatcccCTTAGTGCTCTAGATGTTGCCAAAGACGATTTCATTTCGGGGGGAGGGGGGAATTCTCACTGATGATGAGTCCTCCTACTTAAACAAATCCATTTACAAAAAGGGCCATTGTAAATTCGACCATTGAAATCCGATTCAGTTTTTTTCACTCTTGGAAAGCATAGTTCTTAACCATGACAAGGCAAGTGGAGGTACACGTTAACGGACTATTGGACTGAGGGGCGGTTGGGTACGACCACATTTGGAGTGTTGGGAACACTCTTAGCCCCATACCTCGCCTAAGTGGTTTGACAAATATCGTTTTCTTTTTATCTTACACGGGATAACCCCTCAAAACGGATTTCAGAGACTTGGATAGAAGTGCTAGTTGGCAACGACTATAGAAACGAGGATCCGTTGACGAAAAAGCTTTTGGGGGATTAAGTTATTCCCATGATCACTTATTTTTTAATGTAGATTAAGTGAAAGGTTGGCACTACTAGTCCACCAATTTAGCAAAAAAACGTGTGACAGGTCCAACCGGACCACGGACGGCGGTCACCGATGGCTGAAACTCAATCTATTAATCTGAATTCACACAGCTAGAGGGTATATGATGCGCTATAAAGTAGCCTAATTTCAGCTAAATGGTCCAGGGTGACAATATGTTACATCAAACACACCATGTTTGTGAAACTGGACACTGAAAGCATGCGAAACAATTGAGACCGTCTTTGGATTGAATCAACATGCAATTGGCACAGTTCCTATCCATTTGCGTCCCCGCCTTGTTGCAACAGGTTGCGCGCGTGGCCTTCCACAAATGCACTTATAGCGCACAGTTTTGACTTTGCTCTTACTTTCTGACTCGAATGTTACAGATTTCGGCGCCATGGTTGAGCACGGAGGCCTTGATCTTATGTGTTTAAATAAGTCCTACAGTCACAGTTCCACTACCTCGTCCTCCAGTTCAGAGCGAGAAAAGAAAATATTCACCAAGTTGAAAGTCAGTTTGACTGAGGACTATCCGCAGAAGAACGCGGAGATCCTGAGCGGCCAGTATGGGACTAACTTACTTTTGATCGGCGTGTCGCTGATGCTGGCTATTGCGCACCATGGCGCATCAGTGAAGGAAGAGCACCTGTTGTCGTTTATCACGACCCTCATGATCCTCCAGCTGATATGGATGATATGGTACATCGTGAGCAGAGACAGGCAGAGTAACTTACAGCCTGAAAAGGATGTGCATGCTACTACCTGTTGGATAAGAGGTGGGTTAACTCTTCTTGCGCTCCTCTCGTTGATCATGGATGCCTTCCGAATTGGTTATTTTGTGGGCTATCGATCATGCGTGTCGGCTGTTCTAGGGGTATACCCTATCATCCACGCAACTCACACGATAGCACAGGTTCATTTCCTTTGGTTTCACATCAAGGACGTCATCAAGACCTTCGAGACCTTTGAAAGATTTGGCGTCATCCATGCAGTCTTCACCAACCTGCTACTGTGGTGCAACGGTGTGATGTCTGAGGCTGAGCACTTCCTAAACAACCACAAGAGAAGGCTCTCTTCCCTGGGCTATGTAAACCTCACCATAGTGGATATGGAGCCTCACTGTAATTGCACTACCAGCGCCTGCTCCATGTTCTCCAACAGCCTCTATTACCTATACCCCTTCAACATAGAGTACCACATCTTTGTCTCTGCAATGCTCTTCGTCATGTGGAAGAACATAGGGCGCAGCATTAACCTCCAGTACAACCGGAAAAGGCCGGCTACCAGGACCCAGGGGCTGGTTGTCGGCCCCATCCTGGGTCTTGTCGCCCTGGCCAGCACCATCGGCGTGCTGGTGGTCTATATCATCCACGTGGAAGAGTCGATGGACACCCGGGAGTCGGCCATCGCAATGTTCTACTGCTACGGCATCGTCATGCTGGTGTTCATGTGCTCGGCCGGGGCCACGGGTCTGCTCATATACCGTGCCGACCCTATGCCCATGGACACCACCAAGAACCCCTCGCGGACGCTGGACACAGAGATCCTATTCGGATCGTCGGTGGGCTCCTGGCTCATGTCCTGGTGCAGCGTGGTGGCTGTGGCAGCCTCAAGCAGCAGCCCGAGCTACCGCTGGACCAACCTGATGTACTCGCTGCTCATTGTCCTGGAGAAGTACATCCAGAACCTGTTCATCATAGAGTCCCTCTACCGCCAGCGGGAGGACGGTGAGAGGGAGGACGCTGAGGCGGCGGGGCCTGTGCCGGAGATCTTCTCTGTGACCTCCTCCTTGGCTCCGCCCTACAACGGCATCATCAACCGGGCGTACGAGAACCCAGACAAGGGCTGTGTCACGCTGGAGAACGAGCAGGTGGAGAACGGACAGGTTTACGGAACATTCAGCTCACGGAAACATTCGGCGGTGCCCCTGCACGCCGGGAGCAACGTGGCGGAGACCCCGAGCAAGAAGAGGCAGATTCTGAAGAACATCGCTGTCTTCCTCTTCATGTGCAACATCTCACTCTGGATCCTTCCTGCCTTCGGCTGCAGACCCCAGTATGACAACGGCCTGGAGCAGGAGACGTTTGGCTTCACCATATGGACAACAGTTCTCAATTTTGCCGTGCCCATGAACCTCTTTTACCGCATGCACTCTGTGGCCTCCCTCTTCGAAGTCTTCCGAAGGGTGTGACAAGACAAAGAGGGACCGACGAGATGACGCAACATGCACAAGAACACTTGTCACCAAGGGCTCCATAGAGGAAATTAATAGCAACACAGGTCAACCTTTCAGGAGGAGCTCTTGTCATGTACTTTAGACTTCTAAATAAGCATTGAAACATGTCAGTTTAGGGGGATTATACTAGATGAGATGTCCCTTGTAGCGATGCATCTTCGGAAACATTTTGTAGCACCAGATATAAACAACAAATTACATTGATATCAGACCCTGGATTCAAATAGTATTCggaatctttcaaatactttagctgtgcttgattgagctggCCTGGCACAATGTAACCAATGGAATAGCCCCAAATGTGCAAGAACTGATCCCCCGCCCCCGGAGGCTCACCCAAAACGCCAAAGtctttgaaagatttcaaatagtatttgcttTGTTGTGTGTTGCTGCACTGAAAAGTGAAATTGACATTTGAATTTAGGTCTCTGTTATAACAAGTGTTTGGGTTTGTCTTTTTATGTTCATCAAATTTTTGTTGAATGCGTTATTAAAACGCGTATGTAATAGTTTAGTGTCGAGTTGTCTCTCAGACCTAGTACAGATGTAAGCCAGGCTATGTATGAATGCATCATGAGAGTGGAGCATGATAAGTGATGATACACGATGAAAGTAGATGGTGCAGTGAAACAACTTATATCGAAAAGCCATGCCACATTCATTTTTCAAATCCCGTATCATGGTGAGACTAGTGGGCCTCATCCCCGGTTGTGCTGATATCACACACACCACTGTGTTTGCAGCAGTACTCCAACATCACAGAGAAGCCAAAGAAGCTCTCTCGGTCTCGATTATTCAACGTCACATAAGAACTGTACTATGGATTGTAAAGATGAGGTGCAACTGTAAAAGCCTTaaaggttgtttttttttgtgtgtgtgttgccatttTTATGCATATTTCAAATGCACAGTGTCATGGAGGATGTTCTCAGTGGTCAGAAAAATACACAGGAAACTCAATACTTCTGTGTCCAACACTTGAACTACTTGGCTGGCCACATTCTAGAGTCCTACATGTACTGTAGTATAGGGCGGCGCTAGACTTTGATTGCTCTTCGGTGTAATATTGGACTGTAGTTCTCAGAATCTCCAACAAATGAACACTGGACTGTAGTTCTCACAATCTTTCGCAAACGTCTCATTGTATTGACTGTCCTCAATCATGACTTGTTGACATCATTCCGTGTATATTTGATGACATACACATTCAGTTGAATGCTGTACAGTGTTGACTGATCTTTAATGCTAGTAGCTCTCCTTTTCTTTTAGttatattttttcttcttctaatgAACCTGAAATGTGGTTTccttaaatatatttaacatttcAATAATTGTTATGGAACTCAATTTCACTAAGAAACCGCCTGGGAGTGTGTGAAGCGTGCTCCAATCCACACTGATGTATTCCCTGGACCCATATTAAGCCTAGTTCTGGACTAAAACAaatgctcaatggagaatctccattgaaagtgtCCGTAAACTGGCCACCGTGCCCCATTTGCTCTCCCAATCCATAATGTTGGTGAAGAGACTAAGTATGCACTCTGCATTTTAAAGggacaatctgcagttcaaacaacacCAAAGTGTTCCAccctgccactgttttggtaaacagcagAAGAATAGGGCGGTTATTATGTTATTGAAAAGGGAAACAATACAATATTTGCACAgatcagtatatactgtattgactGACATGCATTTTCCAAAAAGCAAATATGTTGTTTTAAACTGAAACAACCCTGAAACTGAACCAAATATCTTGATTGATGTAGTTTTTGAAAAGTAAGCGTTGACAATAATCTTAACCTGTGATGTTGTTGATCGATTTTGTGATGAATTAGTGAAATGTAGTGCTACTGTATGGTTCATTTTTGGACAACATATTTAGGCTGTAGGGACTATCAGAAAACTGTGAGTTCTACATTGGTGCTAACTACTGTACTTGTTTTCAGTTGTACGTGCCAATCTGTGGTCAATGCTTATTGGTAAACCTGCACCAATACTATATCCTCCCTGTGTACATATCTGAACGTAGATTAAAGTGAATGTACATAAAG
>TU1666532
TTCTCAGTGGTCAGAAAAATACACAGGAAACTCAATACTTCTGTGTCCAACACTTGAACTACTTGGCTGGCCACATTCTAGAGTCCTACATGTACTGTAGTATAGGGCGGCGCTAGACTTTGATTGCTCTTCGGTGTAATATTGGACTGTAGTTCTCAGAATCTCCAACAAATGAACACTGGACTGTAGTTCTCACAATCTTTCGCAAACGTCTCATTGTATTGACTGTCCTCAATCATGACTTGTTGACATCATTCCGTGTATATTTGATGACATACACATTCAGTTGAATGCTGTACAGTGTTGACTGATCTTTAATGCTAGTAGCTCTCCTTTTCTTTTAGttatattttttcttcttctaatgAACCTGAAATGTGGTTTccttaaatatatttaacatttcAATAATTGTTATGGAACTCAATTTCACTAAGAAACCGCCTGGGAGTGTGTGAAGCGTGCTCCAATCCACACTGATGTATTCCCTGGACCCATATTAAGCCTAGTTCTGGACTAAAACAaatgctcaatggagaatctccattgaaagtgtCCGTAAACTGGCCACCGTGCCCCATTTGCTCTCCCAATCCATAATGTTGGTGAAGAGACTAAGTATGCACTCTGCATTTTAAAGggacaatctgcagttcaaacaacacCAAAGTGTTCCAccctgccactgttttggtaaacagcagAAGAATAGGGCGGTTATTATGTTATTGAAAAGGGAAACAATACAATATTTGCACAgatcagtatatactgtattgactGACATGCATTTTCCAAAAAGCAAATATGTTGTTTTAAACTGAAACAACCCTGAAACTGAACCAAATATCTTGATTGATGTAGTTTTTGAAAAGTAAGCGTTGACAATAATCTTAACCTGTGATGTTGTTGATCGATTTTGTGATGAATTAGTGAAATGTAGTGCTACTGTATGGTTCATTTTTGGACAACATATTTAGGCTGTAGGGACTATCAGAAAACTGTGAGTTCTACATTGGTGCTAACTACTGTACTTGTTTTCAGTTGTACGTGCCAATCTGTGGTCAATGCTTATTGGTAAACCTGCACCAATACTATATCCTCCCTGT

Function

NR:

description
PREDICTED: otopetrin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568634.2 False 4844 mRNA 0.45 6 47365071 47372581
TU1666532 True 1109 lncRNA 0.38 1 47371433 47372541

Neighbor

gene id symbol gene type direction distance location
LOC110493987 LOC106565200 coding upstream 3285 47352232 ~ 47361786 (+)
lyar lyar coding upstream 23840 47328302 ~ 47341231 (+)
LOC110493983 LOC106565202 coding upstream 56882 47286927 ~ 47308189 (+)
LOC110493981 cytl1 coding upstream 228201 47135164 ~ 47136870 (+)
LOC110493980 LOC106565205 coding upstream 230486 47109723 ~ 47134585 (+)
LOC110493989 LOC106565315 coding downstream 2055 47374636 ~ 47376700 (+)
idh3b LOC106565197 coding downstream 355843 47728424 ~ 47743582 (+)
LOC110493993 LOC106565195 coding downstream 371775 47744356 ~ 47790013 (+)
LOC100135862 LOC106565314 coding downstream 432931 47805358 ~ 47807518 (+)
LOC100136222 LOC100136222 coding downstream 442310 47814891 ~ 47818587 (+)
G1456597 NA non-coding upstream 117919 47246876 ~ 47247152 (+)
G1456539 NA non-coding upstream 165486 47199377 ~ 47199585 (+)
G1456293 NA non-coding upstream 265906 47098965 ~ 47099165 (+)
G1456291 NA non-coding upstream 268605 47096244 ~ 47096466 (+)
G1456290 NA non-coding upstream 269726 47095139 ~ 47095345 (+)
G1456668 NA non-coding downstream 108 47372689 ~ 47372813 (+)
G1456670 NA non-coding downstream 4201 47376782 ~ 47378517 (+)
G1456699 NA non-coding downstream 42031 47414612 ~ 47415612 (+)
G1456708 NA non-coding downstream 53674 47426255 ~ 47478036 (+)
G1456818 NA non-coding downstream 201751 47574332 ~ 47610240 (+)
G1456570 NA other upstream 136275 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1506570 45856249 ~ 45858501 (+)
G1454127 NA other upstream 2028548 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2105500 45258475 ~ 45259571 (+)
G1453914 NA other upstream 2294146 45069971 ~ 45070925 (+)
G1456969 NA other downstream 460999 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 658333 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 1016501 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 1320740 48693321 ~ 48814670 (+)

Expression


Co-expression Network