LOC100136222 (LOC100136222)


Basic Information

Item Value
gene id LOC100136222
gene name LOC100136222
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47814891 ~ 47818587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124008.1
GACACGCATCATAAACACACGACCACTCAAGATGACCCCGTTGGCACTGGTATGGACAACGGTGTGCTTGTGGAAAACAGTGTACAGCCTGACACCAACCGAGTCCCACTTTGTCCAGTATCCCCCAATCAACAACACAGAGGTCGTCAGCTGTGAGTGTTCCAGCCGCTCCTGCCAGACAGTCTTTTGGTTCCGCACACACCACAACAACTCCGGCTTCCAGTTCCTTCTCAGCCTCAACAATGCTGAGCGGGCCATCTTCGGACCCGGGGTGGATGAACACGGGTTCAAGGCCAGTAAAAGGGACATGGGGAGCAAGGTGGTTTTCACACTGCGCATCATTAAAATAAAGGCAGAGGACGCAGGGTTGTACTCCTGTATGCTCCAGAACCAGAAAGAGAACGAGTTGTGGAGGCCAGGAGTTCTTCTCAGACCCGGAGAAACTCGCCCAACATTAACCCCTGTCACGAAGCCCAAGCCCAAGCCCCCAGGAATCCCAACCGGCCGTTGCACCAAAAGGAACTATCAAACCCCAGAAGGCTGTGGCTACAAAGTTCTGTGGCCGTTGGTCGGAGTACTCCTCACCCTGGCTGTGGCTTTGATCTACACACTGTACTACTTCAGCCGACTACCCAAAAAGTGTCGACATCAGTTTGCCAAGAAAAGACCAATGAAGTAAGACAGAGAGCCCGCACTGCAGACTCTGAGACAGTGCTGTATGTGTCCTTAGCTCTCCTTCTAGGAATCCAATTCGACTGAATCTGAACACAGTTTTATTAGCATGTCACTTTTCTATTCTTTGTTCATTGCAGCAATGAACTTACCTGAAAATGCAACTGTCTAAAATGAAACTCTTAGGATGCTGTCCACAATGTTACTGCCTCTGGCTCTGGTTTTCTAATTAAGTGGATGTATTTAACAGAAGACATTTTTTATGAACTGGTATTACTCTCATGTGCTAGTATACCACAAATGCAgcttttaataaataaataaaatacattactTGTAAATAGGTGCATACTGTATATCTATTGTTTTGTGTTTGCCATGCATTGCCCATCTGGAAGAACAATACCATGGTTTGCCTATTGATATTTGGCAAAACTGTACTTTCAATTGAGTCAAAGCAATACGAAGCATTGTATTCTGGTTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124008.1 True 1157 mRNA 0.46 6 47814891 47818587

Neighbor

gene id symbol gene type direction distance location
LOC100135862 LOC106565314 coding upstream 7373 47805358 ~ 47807518 (+)
LOC110493993 LOC106565195 coding upstream 24878 47744356 ~ 47790013 (+)
idh3b LOC106565197 coding upstream 71309 47728424 ~ 47743582 (+)
LOC110493989 LOC106565315 coding upstream 438191 47374636 ~ 47376700 (+)
otop1 LOC106565199 coding upstream 442310 47365071 ~ 47372581 (+)
LOC118940470 NA coding downstream 10128 47828715 ~ 47833280 (+)
LOC110493995 LOC106565194 coding downstream 120359 47938946 ~ 47971144 (+)
LOC110493996 LOC106565313 coding downstream 162394 47980981 ~ 47985604 (+)
LOC110493997 LOC106565193 coding downstream 182683 48001270 ~ 48026662 (+)
glrx LOC106565191 coding downstream 212305 48030892 ~ 48036585 (+)
G1456920 NA non-coding upstream 86856 47727795 ~ 47728035 (+)
G1456883 LOC106565198 non-coding upstream 100144 47713943 ~ 47714747 (+)
G1456888 NA non-coding upstream 105125 47707696 ~ 47709766 (+)
G1456889 NA non-coding upstream 108966 47704632 ~ 47705925 (+)
G1456916 NA non-coding upstream 113317 47701339 ~ 47701574 (+)
G1457051 NA non-coding downstream 158347 47976934 ~ 47977139 (+)
G1457091 NA non-coding downstream 257779 48076366 ~ 48076682 (+)
G1457093 NA non-coding downstream 269018 48087605 ~ 48087822 (+)
G1457137 NA non-coding downstream 381454 48200041 ~ 48200356 (+)
G1457153 NA non-coding downstream 447377 48265964 ~ 48266185 (+)
G1456570 NA other upstream 586095 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1956390 45856249 ~ 45858501 (+)
G1454127 NA other upstream 2478368 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2555320 45258475 ~ 45259571 (+)
G1456969 NA other downstream 14993 47833580 ~ 47839370 (+)
LOC110494013 LOC106565177 other downstream 570495 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 874734 48693321 ~ 48814670 (+)
erc2 LOC106583361 other downstream 1104220 48866589 ~ 49040356 (+)

Expression


Co-expression Network