Item | Value |
---|---|
gene id | tpgs2 |
gene name | tpgs2 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048581.1 |
NCBI id | CM023235.2 |
chromosome length | 95212422 |
location | 48348965 ~ 48354058 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
tpgs2 | Predicted to act upstream of or within protein polyglutamylation. Orthologous to human TPGS2 (tubulin polyglutamylase complex subunit 2). |
description |
---|
tubulin polyglutamylase complex subunit 2 isoform X2 |
id | description |
---|---|
K16605 | TPGS2; tubulin polyglutamylase complex subunit 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021568673.2 | False | 1524 | mRNA | 0.51 | 7 | 48348965 | 48354058 |
XM_021568671.2 | False | 1521 | mRNA | 0.51 | 7 | 48348986 | 48354058 |
XM_021568672.2 | True | 1490 | mRNA | 0.51 | 7 | 48349008 | 48354058 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110494009 | LOC106565181 | coding | upstream | 19519 | 48307825 ~ 48329446 (+) |
ubap2a | LOC106565184 | coding | upstream | 113774 | 48194992 ~ 48235191 (+) |
dcaf12 | LOC106565186 | coding | upstream | 169702 | 48152982 ~ 48179263 (+) |
ubap1 | LOC106565187 | coding | upstream | 201721 | 48103537 ~ 48147244 (+) |
glrx | LOC106565191 | coding | upstream | 312380 | 48030892 ~ 48036585 (+) |
LOC110494013 | LOC106565177 | coding | downstream | 35035 | 48389082 ~ 48424478 (+) |
LOC110494016 | LOC106565178 | coding | downstream | 155819 | 48509877 ~ 48515292 (+) |
LOC110494018 | LOC106565175 | coding | downstream | 225252 | 48579310 ~ 48583667 (+) |
LOC110494023 | LOC106565171 | coding | downstream | 278094 | 48632152 ~ 48634553 (+) |
bap1 | LOC106565169 | coding | downstream | 322949 | 48677007 ~ 48690097 (+) |
G1457158 | NA | non-coding | upstream | 78919 | 48269373 ~ 48270046 (+) |
G1457157 | NA | non-coding | upstream | 80084 | 48268622 ~ 48268881 (+) |
G1457156 | NA | non-coding | upstream | 80873 | 48267876 ~ 48268092 (+) |
G1457155 | NA | non-coding | upstream | 81232 | 48267420 ~ 48267733 (+) |
G1457154 | NA | non-coding | upstream | 82038 | 48266546 ~ 48266927 (+) |
G1457210 | NA | non-coding | downstream | 20893 | 48374951 ~ 48375172 (+) |
G1457214 | NA | non-coding | downstream | 29673 | 48383731 ~ 48383983 (+) |
G1457215 | NA | non-coding | downstream | 32944 | 48387002 ~ 48387756 (+) |
G1457188 | NA | non-coding | downstream | 102762 | 48456820 ~ 48472295 (+) |
G1456969 | NA | other | upstream | 509595 | 47833580 ~ 47839370 (+) |
LOC100135862 | LOC106565314 | other | upstream | 541484 | 47805358 ~ 47807518 (+) |
G1456570 | NA | other | upstream | 1120169 | 47228219 ~ 47228796 (+) |
G1454824 | NA | other | upstream | 2490464 | 45856249 ~ 45858501 (+) |
bsnb | LOC106565168 | other | downstream | 339263 | 48693321 ~ 48814670 (+) |
erc2 | LOC106583361 | other | downstream | 568749 | 48866589 ~ 49040356 (+) |
G1458807 | NA | other | downstream | 1084948 | 49439006 ~ 49439329 (+) |
LOC110494957 | qrich1 | other | downstream | 1827107 | 50181045 ~ 50192699 (+) |