LOC110494013 (LOC106565177)


Basic Information

Item Value
gene id LOC110494013
gene name LOC106565177
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48389082 ~ 48424478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469225.2
gtttcctccgacacattggtgctgctggcttccaggttggacgCGCGCAGTGCAGTTtcgttgggttgtgtatcagaggacgcatgattctcaaccttcgtctctcccgagcgggagttgtagcgatgagacaagatagtagcaactaacaattggataccttgaaattggggagaaaaagggggtccgttttttttttattaacaaaaTGAACTTCAAATATCTGTGAGCTGTGactgtaaggacatctctctggCAATGCAAAAGGACAAAGGACTGCTTGAAAGAGTCAAGAGCAGCAAAAAATATACATGGGAAAAGTAGACTTGGAGTGGAACATGACGTATTATGATTCCAAGGCAGAGCTAGACTATTACTCCCTGCAAGATGGTGATGGGGAAACAGTGAGCCCTCCACTACAGGTGGAGTTTCTGTATGACGCTAACTTCAAAAATAAGGTCAACTACTCCTTCACAGCCGTTCAGATCCCCACAGACATCTACAAAGGAGGAGTGGCAGTGTGAGCGGCCTCACTTTGAAGCTGATCAAGTCATCAGTGATGGAGATGTTGGACACTCTGTCTGATGACGACTATGTCAACGTGGCCAGGCCTGCTCTCTCATTGTTGTTCCTCAATCCCATTTctgctctgtcattctctctcctttcttgtTTCAGTTTAATGAAAAGGCAGAGGCAGTGGTCCCTTGCTTCAAACACCTGGTCCAGGCCAACGTTCGCAACAAGAAGATCTTCAAAGAGGCTGTAAAGCTCATGCAAGCTAAAGGCACCACAGACTACAAGTCTGGTTTCCACTTTGCCTTCAATCAGCTACTAAACGTGAATGACTTCAAGCTCAACACTCTGAACGACCGCATTCTGTACGAGTGATGCCCAATTCTTTAGGGCTTCTACTATTAAATAGACAAGGACATTTTCGAAAGAAACTGTGTGTGCTTGCAATTTTGTGTTTTGAGCAAACACATGAAGGACATTTAATTACAGATAACAGGCCAACCAGCAGAACATTTAAGAGTGGCTCTCAATGACTCCGCGAtgcatcgtgcataagaacagcccttagccgtggtatattgaccatatattgccttattgcttaaatatactttACAGTTACAGTATCAACCTTGCCTTGCTCTAAATCACCCTGTGCGTTAGTTAACATATGTGCACCTGGGGATAAGAAAAGGCTGAGCATATAATGCCTTTCGATTGCAAACAGCAGTAACTACACATTTGGTCAAAATTTAGACCGAAATCAGACTCTCTTTTTATccccctccaactctctctctctgctctccctctagGTTTCTATTTTGAGACCAGCTCCATCTGTGCCATAATGATTAACACTAGTGCCTCTTACACAGCTGATCCTGGGTCAGCCAGTTCTGCTGGCACAGCTTCCTGGAATTGTTGTTTACCGGACACTGACTAATCCATATCCTGGCCATCTGCCCAAGATTGTTGAACAACTTTCTGGAAGCCCATTTTCTCTAGAGTAGCTACTAACCACACGTCTTGTCTGGGGAAGAGGTTCCAGTGGGCGAGTTCGTTTTgcgcagtggtggaaaaagtaaacTACCCAATTTTTAtacatgagtaaaagtaaagataccttgatagaaaatgactcaagtaaaaatgaaagtcacccagcaaaatactacttgagtaaaagtctaaaagtaattggttttaaatatactcaagtataaaaagtaaatgtaattgctaaatataaaatgtatcaaaagtaaaagtaaaagtataaataatttcacattctttatattaagtaaaccagacagcatcattttcttgtttatgaaatttatggatagccaggctcacactccaacactcagacatcatttacaaaatgAGGCATTTTTGTTTAGTGAGACCACCAGATCAGTGGCAGTAggcatgaccagggatgttctcttgataaatgtgtgaattggaccattttcctgtcctgctactTTCGGTTTAGTTTGCTGCTATTGTTATTGTTTGCTTGGGACAGCGTTTCCTCTCCTTGTGCGCAGTCGTCCGTGTCACCTCGTGTTTTGTACAGATGACTCAAAGCAGTCAATGGAAGAAGGCCATCTTTGTACAACATTTGTCAGCTACatgatttttttaaatctctAAATGTTTATATATGATATTTGGTGATTAAATGCTATTGATATTTTTCTCTTCA
>XR_002469226.2
gtttcctccgacacattggtgctgctggcttccaggttggacgCGCGCAGTGCAGTTtcgttgggttgtgtatcagaggacgcatgattctcaaccttcgtctctcccgagcgggagttgtagcgatgagacaagatagtagcaactaacaattggataccttgaaattggggagaaaaagggggtccgttttttttttattaacaaaaTGAACTTCAAATATCTGTGAGCTGTGactgtaaggacatctctctggCAATGCAAAAGGACAAAGGACTGCTTGAAAGAGTCAAGAGCAGCAAAAAATATACATGGGAAAAGTAGACTTGGAGTGGAACATGACGTATTATGATTCCAAGGCAGAGCTAGACTATTACTCCCTGCAAGATGGTGATGGGGAAACAGTGAGCCCTCCACTACAGGTGGAGTTTCTGTATGACGCTAACTTCAAAAATAAGGTCAACTACTCCTTCACAGCCGTTCAGATCCCCACAGACATCTACAAAGGAGGAGTGGCAGTGTGAGCGGCCTCACTTTGAAGCTGATCAAGTCATCAGTGATGGAGATGTTGGACACTCTGTCTGATGACGACTATGTCAACGTGGCCAGGTCTTTATCTCTTGCTGTCTATCTCGCCTGCTCTCTCACTGTCTTTATCTCTTGCTCTCTATCTAGCCTGCTCTCTCATTGTTGTTCCTCAATCCCATTTctgctctgtcattctctctcctttcttgtTTCAGTTTAATGAAAAGGCAGAGGCAGTGGTCCCTTGCTTCAAACACCTGGTCCAGGCCAACGTTCGCAACAAGAAGATCTTCAAAGAGGCTGTAAAGCTCATGCAAGCTAAAGGCACCACAGACTACAAGTCTGGTTTCCACTTTGCCTTCAATCAGCTACTAAACGTGAATGACTTCAAGCTCAACACTCTGAACGACCGCATTCTGTACGAGTGATGCCCAATTCTTTAGGGCTTCTACTATTAAATAGACAAGGACATTTTCGAAAGAAACTGTGTGTGCTTGCAATTTTGTGTTTTGAGCAAACACATGAAGGACATTTAATTACAGATAACAGGCCAACCAGCAGAACATTTAAGAGTGGCTCTCAATGACTCCGCGAtgcatcgtgcataagaacagcccttagccgtggtatattgaccatatattgccttattgcttaaatatactttACAGTTACAGTATCAACCTTGCCTTGCTCTAAATCACCCTGTGCGTTAGTTAACATATGTGCACCTGGGGATAAGAAAAGGCTGAGCATATAATGCCTTTCGATTGCAAACAGCAGTAACTACACATTTGGTCAAAATTTAGACCGAAATCAGACTCTCTTTTTATccccctccaactctctctctctgctctccctctagGTTTCTATTTTGAGACCAGCTCCATCTGTGCCATAATGATTAACACTAGTGCCTCTTACACAGCTGATCCTGGGTCAGCCAGTTCTGCTGGCACAGCTTCCTGGAATTGTTGTTTACCGGACACTGACTAATCCATATCCTGGCCATCTGCCCAAGATTGTTGAACAACTTTCTGGAAGCCCATTTTCTCTAGAGTAGCTACTAACCACACGTCTTGTCTGGGGAAGAGGTTCCAGTGGGCGAGTTCGTTTTgcgcagtggtggaaaaagtaaacTACCCAATTTTTAtacatgagtaaaagtaaagataccttgatagaaaatgactcaagtaaaaatgaaagtcacccagcaaaatactacttgagtaaaagtctaaaagtaattggttttaaatatactcaagtataaaaagtaaatgtaattgctaaatataaaatgtatcaaaagtaaaagtaaaagtataaataatttcacattctttatattaagtaaaccagacagcatcattttcttgtttatgaaatttatggatagccaggctcacactccaacactcagacatcatttacaaaatgAGGCATTTTTGTTTAGTGAGACCACCAGATCAGTGGCAGTAggcatgaccagggatgttctcttgataaatgtgtgaattggaccattttcctgtcctgctactTTCGGTTTAGTTTGCTGCTATTGTTATTGTTTGCTTGGGACAGCGTTTCCTCTCCTTGTGCGCAGTCGTCCGTGTCACCTCGTGTTTTGTACAGATGACTCAAAGCAGTCAATGGAAGAAGGCCATCTTTGTACAACATTTGTCAGCTACatgatttttttaaatctctAAATGTTTATATATGATATTTGGTGATTAAATGCTATTGATATTTTTCTCTTCA
>XR_005036995.1
gtttcctccgacacattggtgctgctggcttccaggttggacgCGCGCAGTGCAGTTtcgttgggttgtgtatcagaggacgcatgattctcaaccttcgtctctcccgagcgggagttgtagcgatgagacaagatagtagcaactaacaattggataccttgaaattggggagaaaaagggggtccgttttttttttattaacaaaaTGAACTTCAAATATCTGTGAGCTGTGactgtaaggacatctctctggCAATGCAAAAGGACAAAGGACTGCTTGAAAGAGTCAAGAGCAGCAAAAAATATACATGGGAAAAGTAGACTTGGAGTGGAACATGACGTATTATGATTCCAAGGCAGAGCTAGACTATTACTCCCTGCAAGATGGTGATGGGGAAACAGTGAGCCCTCCACTACAGGTGGAGTTTCTGTATGACGCTAACTTCAAAAATAAGGTCAACTACTCCTTCACAGCCGTTCAGATCCCCACAGACATCTACAAAGGAGGAGTGGCAGTGTGAGCGGCCTCACTTTGAAGCTGATCAAGTCATCAGTGATGGAGATGTTGGACACTCTGTCTGATGACGACTATGTCAACGTGGCCAGGTTTAATGAAAAGGCAGAGGCAGTGGTCCCTTGCTTCAAACACCTGGTCCAGGCCAACGTTCGCAACAAGAAGATCTTCAAAGAGGCTGTAAAGCTCATGCAAGCTAAAGGCACCACAGACTACAAGTCTGGTTTCCACTTTGCCTTCAATCAGCTACTAAACGTGAATGACTTCAAGCTCAACACTCTGAACGACCGCATTCTGTACGAGTGATGCCCAATTCTTTAGGGCTTCTACTATTAAATAGACAAGGACATTTTCGAAAGAAACTGTGTGTGCTTGCAATTTTGTGTTTTGAGCAAACACATGAAGGACATTTAATTACAGATAACAGGCCAACCAGCAGAACATTTAAGAGTGGCTCTCAATGACTCCGCGAtgcatcgtgcataagaacagcccttagccgtggtatattgaccatatattgccttattgcttaaatatactttACAGTTACAGTATCAACCTTGCCTTGCTCTAAATCACCCTGTGCGTTAGTTAACATATGTGCACCTGGGGATAAGAAAAGGCTGAGCATATAATGCCTTTCGATTGCAAACAGCAGTAACTACACATTTGGTCAAAATTTAGACCGAAATCAGACTCTCTTTTTATccccctccaactctctctctctgctctccctctagGTTTCTATTTTGAGACCAGCTCCATCTGTGCCATAATGATTAACACTAGTGCCTCTTACACAGCTGATCCTGGGTCAGCCAGTTCTGCTGGCACAGCTTCCTGGAATTGTTGTTTACCGGACACTGACTAATCCATATCCTGGCCATCTGCCCAAGATTGTTGAACAACTTTCTGGAAGCCCATTTTCTCTAGAGTAGCTACTAACCACACGTCTTGTCTGGGGAAGAGGTTCCAGTGGGCGAGTTCGTTTTgcgcagtggtggaaaaagtaaacTACCCAATTTTTAtacatgagtaaaagtaaagataccttgatagaaaatgactcaagtaaaaatgaaagtcacccagcaaaatactacttgagtaaaagtctaaaagtaattggttttaaatatactcaagtataaaaagtaaatgtaattgctaaatataaaatgtatcaaaagtaaaagtaaaagtataaataatttcacattctttatattaagtaaaccagacagcatcattttcttgtttatgaaatttatggatagccaggctcacactccaacactcagacatcatttacaaaatgAGGCATTTTTGTTTAGTGAGACCACCAGATCAGTGGCAGTAggcatgaccagggatgttctcttgataaatgtgtgaattggaccattttcctgtcctgctactTTCGGTTTAGTTTGCTGCTATTGTTATTGTTTGCTTGGGACAGCGTTTCCTCTCCTTGTGCGCAGTCGTCCGTGTCACCTCGTGTTTTGTACAGATGACTCAAAGCAGTCAATGGAAGAAGGCCATCTTTGTACAACATTTGTCAGCTACatgatttttttaaatctctAAATGTTTATATATGATATTTGGTGATTAAATGCTATTGATATTTTTCTCTTCA
>TU1667106
aggtgcacagtgtttcctccgacacattggtgctgctggcttccaggttggacgCGCGCAGTGCAGTTtcgttgggttgtgtatcagaggacgcatgattctcaaccttcgtctctcccgagcgggagttgtagcgatgagacaagatagtagcaactaacaattggataccttgaaattggggagaaaaagggggtccgttttttttttattaacaaaaTGAACTTCAAATATCTGTGAGCTGTGactgtaaggacatctctctggCAATGCAAAAGGACAAAGGACTGCTTGAAAGAGTCAAGAGCAGCAAAAAATATACATGGGAAAAGTAGACTTGTACTCCCTGCAAGATGGTGATGGGGAAACAGTGAGCCCTCCACTACAGGTGGAGTTTCTGTATGACGCTAACTTCAAAAATAAGGTCAACTACTCCTTCACAGCCGTTCAGATCCCCACAGACATCTACAAAGGAGGAGTGGCAGTGTGAGCGGCCTCACTTTGAAGCTGATCAAGTCATCAGTGATGGAGATGTTGGACACTCTGTCTGATGACGACTATGTCAACGTGGCCAGGTTTAATGAAAAGGCAGAGGCAGTGGTCCCTTGCTTCAAACACCTGGTCCAGGCCAACGTTCGCAACAAGAAGATCTTCAAAGAGGCTGTAAAGCTCATGCAAGCTAAAGGCACCACAGACTACAAGTCTGGTTTCCACTTTGCCTTCAATCAGCTACTAAACGTGAATGACTTCAAGCTCAACACTCTGAACGACCGCATTCTGTACGAGTGATGCCCAATTCTTTAGGGCTTCTACTATTAAATAGACAAGGACATTTTCGAAAGAAACTGTGTGTGCTTGCAATTTTGTGTTTTGAGCAAACACATGAAGGACATTTAATTACAGATAACAGGCCAACCAGCAGAACATTTAAGAGTGGCTCTCAATGACTCCGCGAtgcatcgtgcataagaacagcccttagccgtggtatattgaccatatattgccttattgcttaaatatactttACAGTTACAGTATCAACCTTGCCTTGCTCTAAATCACCCTGTGCGTTAGTTAACATATGTGCACCTGGGGATAAGAAAAGGCTGAGCATATAATGCCTTTCGATTGCAAACAGCAGTAACTACACATTTGGTCAAAATTTAGACCGAAATCAGACTCTCTTTTTATccccctccaactctctctctctgctctccctctagGTTTCTATTTTGAGACCAGCTCCATCTGTGCCATAATGATTAACACTAGTGCCTCTTACACAGCTGATCCTGGGTCAGCCAGTTCTGCTGGCACAGCTTCCTGGAATTGTTGTTTACCGGACACTGACTAATCCATATCCTGGCCATCTGCCCAAGATTGTTGAACAACTTTCTGGAAGCCCATTTTCTCTAGAGTAGCTACTAACCACACGTCTTGTCTGGGGAAGAGGTTCCAGTGGGCGAGTTCGTTTTgcgcagtggtggaaaaagtaaacTACCCAATTTTTAtacatgagtaaaagtaaagataccttgatagaaaatgactcaagtaaaaatgaaagtcacccagcaaaatactacttgagtaaaagtctaaaagtaattggttttaaatatactcaagtataaaaagtaaatgtaattgctaaatataaaatgtatcaaaagtaaaagtaaaagtataaataatttcacattctttatattaagtaaaccagacagcatcattttcttgtttatgaaatttatggatagccaggctcacactccaacactcagacatcatttacaaaatgAGGCATTTTTGTTTAGTGAGACCACCAGATCAGTGGCAGTAggcatgaccagggatgttctcttgataaatgtgtgaattggaccattttcctgtcctgctactTTCGGTTTAGTTTGCTGCTATTGTTATTGTTTGCTTGGGACAGCGTTTCCTCTCCTTGTGCGCAGTCGTCCGTGTCACCTCGTGTTTTGTACAGATGACTCAAAGCAGTCAATGGAAGAAGGCCATCTTTGTACAACATTTGTCAGCTAC
>TU1667107
aggtgcacagtgtttcctccgacacattggtgctgctggcttccaggttggacgCGCGCAGTGCAGTTtcgttgggttgtgtatcagaggacgcatgattctcaaccttcgtctctcccgagcgggagttgtagcgatgagacaagatagtagcaactaacaattggataccttgaaattggggagaaaaagggggtccgttttttttttattaacaaaaTGAACTTCAAATATCTGTGAGCTGTGactgtaaggacatctctctggCAATGCAAAAGGACAAAGGACTGCTTGAAAGAGTCAAGAGCAGCAAAAAATATACATGGGAAAAGTAGACTTGGTTCCAGAGGTAGTCGTTGGCGAAGTTCATAATCTGGGTCATGGCGTTCAGTATCAGGATATCCATGTCGttatccatcctcccctcctcgtGGTAGTTCTTCACCGGCAGGATGCAGTTCATGGGAAGGCCTAGCTCATTACTGCAGATCTGCATCTTCTCTTTGATCGCCTTGCTGTAGAAGATTCTCTTCACATCCTTGTTCACCAGCTCACAAGCCTTGTCTGGCATGGTCATGACAACAACTTGAGGAATTTTTAGTCTGCTGGCTTCTGCCCTGATGTTCTTCATCTTGGCTATGACATCCTCTGACATGCGAGAGATTTTGTCCGCTGACACAATACTCACCAAGCAGTGAGTTTTGTCACTTAAGCTGGGATTCTGAATGAATTCCTTTTTTTGGTCCGATAATGGGTGGAAAGGATTGAACTCATAGCCCTCTGGTAGATGGCCCTTCAGAGCATTGATGATGTCATTTGGGTGCAACCCGTTGTTTTGTGTTTCCAGACCCATGACATCATTGAATGCAAAGGGAAGACGTTTTTCACCTGAACGGCCTTGAATGTAGTGTGTGTCATactgaaaataaatgttttatttaataacATTTCTATGGAAAGGATAAATACCCTCACACTCAGAAAAATGAAAAGCATCCCAAACTGAGGCTCAGGATCAAcaaatatatacactgagtgtccaaaacattaggaacacctgatcTTTCAACCAaactctacctacagtacatatacatattacctcaattacctcaatgccaagagtgtgcaaagctgacatcaaggcaaagggtggctactttgaagaatctcaaaaataaaatatattttgatttgtttaacactttttgattactacatgattccatcagtgttcataattttgatgtcttcaccattattctacaatgtagaaagtagtaaaaataaagaaaaacccttgaacga

Function

NR:

description
interferon-induced protein 44-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469225.2 False 2236 mRNA 0.42 5 48389093 48424478
XR_002469226.2 False 2301 mRNA 0.42 5 48389093 48424478
XR_005036995.1 False 2168 mRNA 0.41 5 48389093 48424478
TU1667106 False 2061 TUCP 0.42 4 48389082 48424405
TU1667107 True 1308 lncRNA 0.42 5 48389082 48392985

Neighbor

gene id symbol gene type direction distance location
tpgs2 tpgs2 coding upstream 35035 48348965 ~ 48354058 (+)
LOC110494009 LOC106565181 coding upstream 59647 48307825 ~ 48329446 (+)
ubap2a LOC106565184 coding upstream 153902 48194992 ~ 48235191 (+)
dcaf12 LOC106565186 coding upstream 209830 48152982 ~ 48179263 (+)
ubap1 LOC106565187 coding upstream 241849 48103537 ~ 48147244 (+)
LOC110494016 LOC106565178 coding downstream 85399 48509877 ~ 48515292 (+)
LOC110494018 LOC106565175 coding downstream 154832 48579310 ~ 48583667 (+)
LOC110494023 LOC106565171 coding downstream 207674 48632152 ~ 48634553 (+)
bap1 LOC106565169 coding downstream 252529 48677007 ~ 48690097 (+)
bsnb LOC106565168 coding downstream 268846 48693321 ~ 48814670 (+)
G1457215 NA non-coding upstream 1337 48387002 ~ 48387756 (+)
G1457214 NA non-coding upstream 5110 48383731 ~ 48383983 (+)
G1457210 NA non-coding upstream 13921 48374951 ~ 48375172 (+)
G1457158 NA non-coding upstream 119047 48269373 ~ 48270046 (+)
G1457157 NA non-coding upstream 120212 48268622 ~ 48268881 (+)
G1457188 NA non-coding downstream 32342 48456820 ~ 48472295 (+)
G1457311 NA non-coding downstream 150521 48574999 ~ 48575223 (+)
G1457973 NA non-coding downstream 183742 48608220 ~ 48609579 (+)
G1457988 NA non-coding downstream 196956 48621434 ~ 48710016 (+)
G1458072 NA non-coding downstream 325066 48749544 ~ 48749764 (+)
glrx LOC106565191 other upstream 352510 48030892 ~ 48036585 (+)
G1456969 NA other upstream 549723 47833580 ~ 47839370 (+)
LOC100135862 LOC106565314 other upstream 581612 47805358 ~ 47807518 (+)
G1456570 NA other upstream 1160297 47228219 ~ 47228796 (+)
G1454824 NA other upstream 2530592 45856249 ~ 45858501 (+)
erc2 LOC106583361 other downstream 498329 48866589 ~ 49040356 (+)
G1458807 NA other downstream 1014528 49439006 ~ 49439329 (+)
LOC110494957 qrich1 other downstream 1756687 50181045 ~ 50192699 (+)
atxn7l2a LOC106565127 other downstream 2006329 50427145 ~ 50437612 (+)

Expression


Co-expression Network