LOC110494016 (LOC106565178)


Basic Information

Item Value
gene id LOC110494016
gene name LOC106565178
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48509877 ~ 48515292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568678.2
AAATTTAATTCAATATAAATTCTCCACTTCATGAGTTCATTCAATTGGAATTTCTAATGAATTtggaattgatcccaaccctgttACATTCCCTCTCAGAAAAGCAAACATGGGTGGAGCTGAATCAACGCCAGCActgacaccaacaccaacacccccaccaaagAAGGAATTTGACCAACAATGGAGGAAAACATGTTGGAGtaaagaagagagagaccacATGGTGGATGATCTGAGAAGCTTTAAACTGAGTGATCCTGACGTGGGTCAGCTCAGATGCCTGCTATATGGACCAATCAGTGCAGGAAAGTCCAGCTTCATCAACTCAGTCAACAATGTCTTCCAAAATCGGACAACAAGTGGTGCCCTGGTAGCTTCTGCCTCTGGCTTTAGCTTCACCACAACAtATGACACACACTACATTCAAGGCCGTTCAGGAGAAAAACGTCTTCCCTTTGCATTCAATGATGTCATGGGTCTGGAAACACAAAAAAAAGGGCTGCACCctgatgacatcatcaatgcTCTGAAGGGCCATCTACCAGAGGGCTATGAGTTCAATACTGTCCACCCATTATCAGACCAAAAAAAGGAATTCATTCAGAATCCCAGTTTAAGTGACAAAACTCACTGCCTGGTGAGTATTGTGTCAGCGGACAAAATCTCTCTCATGCCAGTGGATGTCATAGCCAAGATGAAGAACATCAGGGCAGAAGCCAGCAGACTAAAAATTCCTCAAGTTGTTGTCATGACCATGCCAGACAAGGCTTGTGAGCTGGTGAACAAGGATGTGAAGAGAATCTTCTACAGCAAGGCGATCAAAGAGAAGATGCAGATCTGCAGTAATGAGCTAGGCCTTCCCATGAACTGCATCCTGCCAGTGAAGAACTACCACGAGGAGGGGATGCTGGATAACGACATGGATATCCTGATACTGAACGCCATGACCCAGATTATGAACTTCGCCAACGACTACCTCTGGAACCTCCAACAACATGCAAATCAAAAAAATAATAAGTATTAAGAGATTAATTAGTGAGCCCTGCAGTTTAAGATTGGAATAAAGTTCCTAATTTCTATATTTTTGACATTGTTGTCGTATAATTTAATGTCCATGTAGAGGCCTAAATATGTTATCTGGGGCTCTGggagaaatgtattttgattgaGTATGCATTTCGTGTGACAAGAATCTTTAAAATAAACTGAGTATTGATTGCTGTGCATATAAGCTACTTTTTAACATCAACACCCATCAGTGTACAATTGTTAGATAAACTAGCATCCTTCACTGAATTCTTTAGATGACAAACTGATTTTAAAATATACTTTGTTTTACTGATGTTGCTGTAACATTAATTTCATGTGACATTATTGTTGTATCATTTTTGTGTGTAGCTTTTCTGCTTAAATTAACTTAAT

Function

NR:

description
interferon-induced protein 44-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568678.2 True 1425 mRNA 0.40 7 48509877 48515292

Neighbor

gene id symbol gene type direction distance location
LOC110494013 LOC106565177 coding upstream 85399 48389082 ~ 48424478 (+)
tpgs2 tpgs2 coding upstream 155819 48348965 ~ 48354058 (+)
LOC110494009 LOC106565181 coding upstream 180431 48307825 ~ 48329446 (+)
ubap2a LOC106565184 coding upstream 274686 48194992 ~ 48235191 (+)
dcaf12 LOC106565186 coding upstream 330614 48152982 ~ 48179263 (+)
LOC110494018 LOC106565175 coding downstream 64018 48579310 ~ 48583667 (+)
LOC110494023 LOC106565171 coding downstream 116860 48632152 ~ 48634553 (+)
bap1 LOC106565169 coding downstream 161715 48677007 ~ 48690097 (+)
bsnb LOC106565168 coding downstream 178032 48693321 ~ 48814670 (+)
erc2 LOC106583361 coding downstream 351297 48866589 ~ 49040356 (+)
G1457188 NA non-coding upstream 37582 48456820 ~ 48472295 (+)
G1457215 NA non-coding upstream 122121 48387002 ~ 48387756 (+)
G1457214 NA non-coding upstream 125894 48383731 ~ 48383983 (+)
G1457210 NA non-coding upstream 134705 48374951 ~ 48375172 (+)
G1457311 NA non-coding downstream 59707 48574999 ~ 48575223 (+)
G1457973 NA non-coding downstream 92928 48608220 ~ 48609579 (+)
G1457988 NA non-coding downstream 106142 48621434 ~ 48710016 (+)
G1458072 NA non-coding downstream 234252 48749544 ~ 48749764 (+)
G1458083 NA non-coding downstream 248334 48763626 ~ 48763825 (+)
glrx LOC106565191 other upstream 473294 48030892 ~ 48036585 (+)
G1456969 NA other upstream 670507 47833580 ~ 47839370 (+)
LOC100135862 LOC106565314 other upstream 702396 47805358 ~ 47807518 (+)
G1456570 NA other upstream 1281081 47228219 ~ 47228796 (+)
G1458807 NA other downstream 923714 49439006 ~ 49439329 (+)
LOC110494957 qrich1 other downstream 1665873 50181045 ~ 50192699 (+)
atxn7l2a LOC106565127 other downstream 1915515 50427145 ~ 50437612 (+)

Expression


Co-expression Network