bap1 (LOC106565169)


Basic Information

Item Value
gene id bap1
gene name LOC106565169
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48677007 ~ 48690097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568695.2
ttatactccagtctagtaggtggcggtaatgcaacatttattggatgccaaccgccgttaaacctaATCGAAGAAGAAGAATAGTAGTCTTGAATTCGACCATTTCGAAGTCGCGCATAAATGACGTGAATTAAAGCGTCCAAGCTGTCGTTCTTTTGTGTTAGAAATGAATATGTCTTCGTTCCGTTAGCTAATTGGGTAAAACTTTTGCAGTGGTTATGTGAATATGGACTGACTCAGTACTTAGCCAAATATCGATGGACTGTAATTTCATACAAAAATGAACAAAGGGTGGCTGGAACTCGAGAGTGACCCGGGGCTATTCACGCTCTTGGTGGAGGATTTTGgtGTGAAGGGGGTTCAGGTGGAGGAGATATACGACCTACAAAGCAAGTGTCCAAGTCCTGTCTATGGCTTCATCTTCCTGTTCAAGTGGATTGAAGAACGAAGGTCTAGGAGGAAAGTCTCCACCTTGGTGGATGAGACGTCTGTCATTGATGATGACATTGTTAATGACATGTTCTTTGCTCACCAGCTGATCCCCAACTCCTGCGCCACCCATGCACTTCTGAGCGTGCTCCTGAACTGTAGTGGGGTTGAGTTGGGCACTACCCTCAGCCGCATGAAGACCTTCACTAAAGGCTTCGGTCCAgagAGTAAAGGCTACGCCATTGGAAATGCCCCAGAGCTGGCCAAAGCACACAACAGCCATGCCAGACCGGAGCCCAGGCACCTGCCGGAGAAGCAGAATGGGATTAGTGCCGTGCGGACCATGGAAGCGTTCCACTTTGTCAGCTACGTGCCCATCAAAGACCGACTGTTTGAGTTAGACGGCCTCAAGGCATACCCCATTGACCACGggccatggggagaggaggaggagtggacgGACAAGGCGCGACGGGTCATCATGGAGAGGATTGGCTTGGCCACAGCTGGAGAGCCATACCATGATATCCGCTTCAACCTGATGGCAGTGGTTCCTGACCGCAGGGTGAAGTATGAGTCCAAACTAGAGATCCTCAAGAGGAACAGACAGATGGTTCTGGAGGGATTACAGCAGCTGATCCGGGTCACCCAGCCAGAGCTCGTCCAGGACAGAAAGCAGCAGGACTCCTCCCCTTCAGAGGACACACCCCCTGCTATCAAAAAAGAAGAGGCAGAGCCTCAACCTGTTACATCACAGGGGGCTGAGCAGACTCCTCCCACAGCCCAGTCCCAGTCGACACCCAGCCCCTCAGGCAAGGGGAAGGCCATGGGGAAACCAACCGCCCCAGCGGGGGGAGGGGGAGCCACGCAGCCTGTCAACAGCACCTCCCTAATCGCCCCACGACTGCCCGCCTTCCTGGACAACCACAACTACGCCAAGTCCCCCATGCAGgaggaggaggaccttgCGGCAGGGGTGACGGGGGTGGGTCGTCCCCGGGTCCCTGGCGCAAACCAGCCCCCCTTCTCTGATGTTGATGACGATGAGGAGGAAGTAACTGGCACAGCAGGAGGCACACCCACCAGGTTCAGGCGGAAGGCGGGCCTGCGTTCCCGTACGGGCCGTGCAGGCGGCGGTGGCGTGGAGACCAAGCTGGCGCTGAGTGTCCTGGCCGAGAAACTCAAGAAGGAAGTCAAGAGGAAGGACGCTCTGGCCACGCCCCTCTCGGTCCGCACCGAGGGCCGCACGGGGGGCATCGTGATCACCGCCACCTCGCAGCCTTCGCCCACGCCAAGCAACGAGAGCACCGACACCGCCTCGGAGATCGGCAGCGCTTTCAACTCGCCACTGCGCTCCCCGGCTCGCTCCCAGGCGGCCACACGACCCTCCAGCCCCGTGGCGTCCCACCTGTCCCGGGTATTGTTCGGGGAGGATGAGGGTCTGCTGAGGCTGGACGCCAGGCACAACCGGGCTGTTAGAGAGCTGGGGCCCTCCGTCAGCACTGCCCTGCTGCATCTACAGGAGGACGGTGTTATATATGCTGTACCGCCACCCGCTGATACACCACCTGAGGGGTCCAAGCGAGAGAAGGCAGGCACTCCAGAGAAGGTAAAAGACCAAGAGCAAGGGAGCAACCCAGCAGGAAGGGGGGAAGGTGTGAAGGAGGATGGTAAGGAGGGACCATCGGTGGAGGTGAAGGAGGAGCGCAAAGACGTCAAACCCAGAAAGGAAAAGATCATCTCCACGGAAACCGTTGGAAGCAACAAGCCCTCAGGGGAGAAATACTCTCCTAAAGAGCTGCTTGCTCTGCTGAAATGTGTGGAGGCGGACATCGCCAACTATGAAGTGTTTttgaaggaggaggtggagaagaggaagaaatACAAAATCGATGACCAGCGAAGGACCCATAATTATGACGAGTTCATCTGTACTTTCATATCCATGCTGGCCCAAGAAGgCATGTTGGCTAGTCTGGTCGAGCAGAATATCTCTGTGCGCCGTCGCCAGGGCGTGAGCATCGGCCGTCTACACAAACAGAGGAAACCAGACCGCAGGAAACGCTCGCGACCCTACAAGGCCAAGCGCCAGTGACCCCCAGGAAGTGTTAGCTCGGAATCACCGATCACCAATCGCAGCAGAGAAAATGCAAAAACCCTTGTTGCACTCATGACACTGTCCTGTGACGTCAGGGAGAAAAGGACTCATATTGCTGTATTTGTGTCAGTCTCTGACTTCCTCCAATGGACCATCTGttgattagtttaatcaggttTGCTTTACTGTAAGCAGAAGAGTAATTTTGTATGTTTGTGTTCCTGAGTGACACcttattccctagtgcactacttttgaccagagccctacatagtgcaatacttttttaTGGGCCCTGATCACATGTTgggcactatatagagaattgggtgccatttgggatgcactcctAGTCTCCCATGTAAAAGGACCTCTGTCTGTGCCATCACACTGTGtactgggtcgtgttcattaggcacgcGGCGCAAACTTTATGAACGTTTTGCAAATGAAAATGAGTGTTTGCAATTCCAGATagttcctccctgtttcagtctgtttttcttccatttggtgcctaatgaacacaaagGTGTGACAACTGATTGAGGGACACAGGAAGCTTCTGGGAAGTCTTTGAGTTGGTCGGATCATGTGATGTGACTCTTTCCTGTCAAGAAGGGCTGGTTTACTGCTATTTGCTTGCTTGTATTATGCTTTGGCAGTACCGTACtatgcgtcccaaatagcaccctatttcctatttagtgcactacctttaggtctctgatcaaaagtagtgacctatatagggaataaggtgcaatttgggatATACTGTATCCCCTTTTGAGGTCCTGTAAATGAATGGATTAGATCTactcttgtttttttattttttatctgtaaATGATCTCTAAATGTAGATTCTAATGTTTGAGAgcatgagatgtgtgtgtgtgtgggggagtgtGTAAGCAGTTTGTATGTTTCTGTACATATGTATCTGTCAGCTCAGCATCAGTGGTAACAGAagtgtttaaaaataataataaccctAGTCACATGAATACAATGAACTCCACAGAAGCACTATTGACCTCACTCACTTCTCATCATGCCATAGGTGGATGCTCTGGGTCATATATTTGGTGAGATAAAAACATATCACATGGG

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase BAP1-like

GO: NA

KEGG:

id description
K08588 BAP1, UCHL2; ubiquitin carboxyl-terminal hydrolase BAP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568695.2 True 3643 mRNA 0.52 17 48677007 48690097

Neighbor

gene id symbol gene type direction distance location
LOC110494023 LOC106565171 coding upstream 42454 48632152 ~ 48634553 (+)
LOC110494018 LOC106565175 coding upstream 93340 48579310 ~ 48583667 (+)
LOC110494016 LOC106565178 coding upstream 161715 48509877 ~ 48515292 (+)
LOC110494013 LOC106565177 coding upstream 252529 48389082 ~ 48424478 (+)
tpgs2 tpgs2 coding upstream 322949 48348965 ~ 48354058 (+)
bsnb LOC106565168 coding downstream 3227 48693321 ~ 48814670 (+)
erc2 LOC106583361 coding downstream 176492 48866589 ~ 49040356 (+)
LOC118940102 NA coding downstream 287539 48977636 ~ 48980567 (+)
LOC110494028 LOC106565296 coding downstream 319911 48977901 ~ 49120417 (+)
LOC118940474 NA coding downstream 343865 49033962 ~ 49035924 (+)
G1457973 NA non-coding upstream 67428 48608220 ~ 48609579 (+)
G1457311 NA non-coding upstream 101784 48574999 ~ 48575223 (+)
G1457188 NA non-coding upstream 204712 48456820 ~ 48472295 (+)
G1457215 NA non-coding upstream 289251 48387002 ~ 48387756 (+)
G1458072 NA non-coding downstream 59447 48749544 ~ 48749764 (+)
G1458083 NA non-coding downstream 73529 48763626 ~ 48763825 (+)
G1458033 NA non-coding downstream 82960 48773057 ~ 48773274 (+)
G1458093 NA non-coding downstream 85368 48775465 ~ 48775684 (+)
glrx LOC106565191 other upstream 640424 48030892 ~ 48036585 (+)
G1456969 NA other upstream 837637 47833580 ~ 47839370 (+)
LOC100135862 LOC106565314 other upstream 869526 47805358 ~ 47807518 (+)
G1456570 NA other upstream 1448211 47228219 ~ 47228796 (+)
G1458807 NA other downstream 748909 49439006 ~ 49439329 (+)
LOC110494957 qrich1 other downstream 1491068 50181045 ~ 50192699 (+)
atxn7l2a LOC106565127 other downstream 1740710 50427145 ~ 50437612 (+)

Expression


Co-expression Network