LOC118940474


Basic Information

Item Value
gene id LOC118940474
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49033962 ~ 49035924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036997.1
GGATCTATTCTCTCATCACCTCTGTACCGTCCACGTTTTTGCCCTCAGGCCCTGTTGAAGAGAATGGACAGTCATCTGAAAAAGACAATTCTGATACGTACCACGTATACAGTTCAATCCCTGACCGACCAGCAACATCAGCCCAGCCGGATGGGTTGTACAGTCTTCTGCAAGCACACTGAAACTACACCACTGGCTCTCTGTAGCTATTTCTCACAGAAATACTCTTTCTTGCAGGATAACCTTTATGTCTCAAACATCATGTTACTGTAAATAAGTATATAATACATCTGCTGCAGTACCGTTTCTATTTATAAGCAACATAAGTGGCTGCCATcccatagcaaaatgtgtagaactgcaggaaataagctttaaaactGAATTTCTTTCTACCCCAAGGCATAATGTGGGAAATTAGCTTTTTAACTGCAAAGTTccctccgc

Function

NR:

description
uncharacterized protein LOC109877386 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036997.1 True 447 mRNA 0.42 3 49033962 49035924

Neighbor

gene id symbol gene type direction distance location
LOC118940102 NA coding upstream 53395 48977636 ~ 48980567 (+)
erc2 LOC106583361 coding upstream 95941 48866589 ~ 49040356 (+)
bsnb LOC106565168 coding upstream 220739 48693321 ~ 48814670 (+)
bap1 LOC106565169 coding upstream 343865 48677007 ~ 48690097 (+)
LOC110494023 LOC106565171 coding upstream 399409 48632152 ~ 48634553 (+)
LOC110494034 LOC106565158 coding downstream 273228 49309152 ~ 49319617 (+)
cacna1da LOC106583449 coding downstream 442992 49478916 ~ 49594500 (+)
LOC110494954 LOC106565153 coding downstream 568739 49604663 ~ 49657967 (+)
LOC110494957 qrich1 coding downstream 1145121 50181045 ~ 50192699 (+)
LOC110494976 LOC106565138 coding downstream 1161179 50197103 ~ 50207320 (+)
G1458226 NA non-coding upstream 13282 49019387 ~ 49020680 (+)
LOC110494028 LOC106565296 non-coding upstream 21991 48977901 ~ 49120417 (+)
G1458133 NA non-coding upstream 30385 48973205 ~ 49003577 (+)
G1458176 NA non-coding upstream 83666 48945485 ~ 48950296 (+)
G1458140 NA non-coding upstream 185727 48848028 ~ 48848235 (+)
G1458237 NA non-coding downstream 32103 49068027 ~ 49083653 (+)
G1458264 NA non-coding downstream 106146 49142070 ~ 49142648 (+)
G1458265 NA non-coding downstream 110583 49146507 ~ 49168867 (+)
G1458293 NA non-coding downstream 145978 49181902 ~ 49183741 (+)
G1458294 LOC106565161 non-coding downstream 148766 49184690 ~ 49220831 (+)
LOC110494013 LOC106565177 other upstream 609557 48389082 ~ 48424478 (+)
glrx LOC106565191 other upstream 997379 48030892 ~ 48036585 (+)
G1456969 NA other upstream 1194592 47833580 ~ 47839370 (+)
LOC100135862 LOC106565314 other upstream 1226481 47805358 ~ 47807518 (+)
G1458807 NA other downstream 403082 49439006 ~ 49439329 (+)
atxn7l2a LOC106565127 other downstream 1394883 50427145 ~ 50437612 (+)
G1459769 NA other downstream 1740605 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 1859016 50894903 ~ 50897444 (+)

Expression


Co-expression Network