LOC110494034 (LOC106565158)


Basic Information

Item Value
gene id LOC110494034
gene name LOC106565158
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49309152 ~ 49319617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568713.2
ACTCTTCCACATCTCAGTCTTTATTTCACACAGCGACAGACCTGGCGGACACTGGCAGCGAAACAACGACACGAACTCCCACAATACTTTTGGAATTTAACCCGCTTTATTTCAAATTCAATAGTTAAGAGACAAATATGGCGACTGAAATCATGGAAATGAACGGACATGCCGACGAAGAGGAGCCGCGTCAAGGCCCCCGGAATCGGAGGCAGGCAGACCAGCCTATAAACATGAACCGGTATGCTAATAAGAAGAGCGCAGCAGAGAGCATGCTGGACGTGGCGTTACTCATGGCCAACGCCTCCCAGCTGAAGGCCGTCCTGGAGCAGGGTCCAGACTTCACCTTCTACACCCCCCTCATCACCTTCATCTCCATATCCCTCATCCTGCAGATCACCGTGGGCGTCCTGCTCATCTTCATTGTGAAGTGGAACCTGAACGATGAGAGCACCCACTTCAAGCTGAACATTATGGAGAACATCGCCACAGCACTCATCTTCATCATCGTTGTAGTCAACGTCTTTATTACGGCCTTTGGTGTCCAAAAGCCCAATCAAAACTCTTAACTTCACTCCTTACCCCTGGTCATTAGTTACTACAGTTATACAGGCATTATCCTGGTGTCATAtgcacaatacacacataatatgCCAACGTGTACCCTTGGTTGAAATCCTCAAATAAGTGTTTGGTAATCAGTGTCAAATTGTCAGGTTACTTGAGTTGAATAAATATATGTATTGTACACGGACTTACAGTTAGAATGCACAAAGGTGAATCTTAAAGTAAATGTTTTCTACCGGAATGCCATAGCTGCACAAACCAAATCACTGCTACTTTACAAGCAAGAGAGGTTGACGGATCCAGTATTCCATCAGATTCTCCGTGACACCAAAGACAATGGATCGATTCGTTATACAGGATTCCCACTGGCCTTTCATACACGCGGCCAGTCACAATCAGGTTGACCCTACTTCATGACGATCCTGTCACACTTCATATTTCGCTATTACTTGTGTGAACAATGCATTGTTCAAATGACCAACAGTGTTCATGTGTTGCCTTGATAAATATGTACATATCAGGGTTATTTTAGATCcattttatatatacacacacgcacacagctcAGTGGTgatttttagcatgtaaatcttcaGACAGATGTTAATTCAGCAAGATGTTGAGGCCTTACCTTTACTCTTCATTCAGtcaccacacagagacagaaagacagagacagagagcctaTCATTTGAAGTATTTTATTAGGCCTATGTGGTCTAAAAGGGAAAAACGATACAATCACGAGGATCCACTTTTATTAGACAACATACCGACGCATAGACAGCGCAACGAGCAAACAAAACAACCCTCGCAATATCAAATGGAATCACATGGGTCTTTTACTGAACTTTTTGttgaaaacaaatatttgaatGGGAAGAGAGAGACGGTCACTGGCAAACAAATAGCAAAATCTACTCAtttcaaggggtgtccacatacactaaaGTATCTCATATCTTAGAGCTGCTGTCATGGTAACTTTGTTCTAGAAATACTCAAGCTGTACAGACCCAGCTGCTGTGTTTTTTagcccattgattttgttgtaatgtttgagtcactcagctatcacatgaacacacacaagatacggcaaaatgtgtagaatgtaGGAAATTAGCTTTTAAATGCCTCTCAAAAATATCGCCCTCCATGGCCgccattttaaagctaatttcctacatattctgtgtgttcatgttgagtctagtttatttttacagggacagtgcacattaatcaacgttctcagtaaaagtgccggttttagccagccggctaattttcaaccacaGTCCCTGGGCAGGCTTGCCGAGTGTATAGAATTtcaggaaatgtgctttaaacttgctaaatgttctctccgccaacaagaggggtgtgaaaaGTTTGTGAACCACTGATCTAGCGTTGCAAAATGTTGGTAATTAGTGGATTTTTACCCAAAATTCTCATGTTAAGTTACTTGAATTTTACAACCGGACATTCAGACTTTGCCTGCTGCCTTATATGTGATCTCAGATCTatgcaacatacagtatgtaccatCACAATTTAtgtgtaaaaaataatatataatatttcaTGCCATGTTTAGACCTTAAGCTTtgccaatatatatattttaatgatTGAAggcattttctatttttttaaatgaaggacCAAATCATATTTTAGCCCCACTTTTAATGCACTTTGTTGTTTGATGCACTGTATGCAGTAGAAAACTGTACTATTCTGAAATGAAGTTTGTAAATGAAAACTAA

Function

NR:

description
ninjurin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568713.2 True 2342 mRNA 0.41 3 49309152 49319617

Neighbor

gene id symbol gene type direction distance location
LOC110494028 LOC106565296 coding upstream 188735 48977901 ~ 49120417 (+)
LOC118940474 NA coding upstream 273228 49033962 ~ 49035924 (+)
LOC118940102 NA coding upstream 328585 48977636 ~ 48980567 (+)
erc2 LOC106583361 coding upstream 371131 48866589 ~ 49040356 (+)
bsnb LOC106565168 coding upstream 495929 48693321 ~ 48814670 (+)
cacna1da LOC106583449 coding downstream 159299 49478916 ~ 49594500 (+)
LOC110494954 LOC106565153 coding downstream 285046 49604663 ~ 49657967 (+)
LOC110494957 qrich1 coding downstream 861428 50181045 ~ 50192699 (+)
LOC110494976 LOC106565138 coding downstream 877486 50197103 ~ 50207320 (+)
LOC110494984 LOC106565139 coding downstream 903024 50222641 ~ 50229675 (+)
G1458301 NA non-coding upstream 39504 49209950 ~ 49269648 (+)
G1458294 LOC106565161 non-coding upstream 88321 49184690 ~ 49220831 (+)
G1458293 NA non-coding upstream 125411 49181902 ~ 49183741 (+)
G1458265 NA non-coding upstream 140285 49146507 ~ 49168867 (+)
G1458264 NA non-coding upstream 166504 49142070 ~ 49142648 (+)
G1458725 NA non-coding downstream 11118 49330735 ~ 49332979 (+)
G1458811 NA non-coding downstream 125191 49444808 ~ 49445154 (+)
G1458919 NA non-coding downstream 146227 49465844 ~ 49466045 (+)
G1458927 NA non-coding downstream 149664 49469281 ~ 49469561 (+)
G1458931 NA non-coding downstream 151297 49470914 ~ 49471432 (+)
LOC110494013 LOC106565177 other upstream 884747 48389082 ~ 48424478 (+)
glrx LOC106565191 other upstream 1272569 48030892 ~ 48036585 (+)
G1456969 NA other upstream 1469782 47833580 ~ 47839370 (+)
G1458807 NA other downstream 119389 49439006 ~ 49439329 (+)
atxn7l2a LOC106565127 other downstream 1111190 50427145 ~ 50437612 (+)
G1459769 NA other downstream 1456912 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 1575323 50894903 ~ 50897444 (+)

Expression


Co-expression Network