LOC110494954 (LOC106565153)


Basic Information

Item Value
gene id LOC110494954
gene name LOC106565153
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49604663 ~ 49657967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570293.2
TTTCGTGTTTTACCTCTTCACCTTTTCACCTTCTTTCCGGGGTTCTTACAGCAAGTGATGCGGCTAGGTTACCCCCCACACACATATTGGTTCTTTTCGCTCATGCTCTCTCGCGCCCTGCTTCGCGCTCTTTGCTCTACCTGCAACACCTCGTTTTACTCCCCCAGTGTTCCCTGGGATAGCAACTGAGGTGGTTTTCAGATTGAGCTCCGCAAATCTGGGAAAATCCCCACGAGAGAATATCGTCATTTGCTTGAGAGACGATAACAGCAATTGTAATGTTTTCCAGAAATGGAGGCTTGACTTGAGTCTCTTGCTGTTCCTCCCTGTACCGACATTCATAGTTCAACCATCTCCTTCAGCACGCGGGTCCCTTCAGGAGTGACAACTGGCACCTTGGACGCGGGACTGGCGCGAGGGAGGCGGCACGAATGTGCCGGGTCTGTATGTGCTGCTTTTCGCGCTGAGTGCGTTTTCGGGACTAGTAAAAGAAGAGCTTGCGCGTGCCATTGTACCGGGTTCGGTTGTCGGGAAGACTCGTGAAGATGCTGTGGAATTGGAGGATCCTCTTTCCACACGTGTGCTGCGCCAGCTTCCTTCTGTCCTGGATTATGCTGGGCACGGTGGTAGAGGTGATGGGGTCCCAGCCAGGGATTCCTCTCTCAGTGGTGAAGTTATGGGCCTCAGCGTTTGGTGGAGAAATTAAATCAATTTCTGCAAAATACTCTGGATCCCAGCTGCTGCAGAAGAAATATAAAGAATTTGAGAAGTCCGTCCGAGTGGAAGAAATTGATGGCATGAAAGTGGTCAAAACTCTCGCAAAGAAGATGGAGGAAATGTTCCGGATGAAAAAGGAGGCCATGCGGCGGCTGGTGGAGGCAGCAGAGGAGGCCCATCTACAGCACGAGGAGGATCCAGAGCTGCAGTATGAGTACTTTAACGCGGTGCTGATCAATGAGGTGGATGAGGAGGGCAACAATGTGGAGCTGGGAGGCGAGTTCGTTCTGGAACCCAACGACCACTTCAACAACCTGTCAGTCAACCTCAGCCTCAGTGTGGTGCAGGTGCCCACCAACATGTACAACAAAGatCCAGCCATAGTGAATGGGGTGTACTGGTCAGAGGCCTTGAATAAAGTGTTTGTGGATAACTTTGAAAAAGATCCATCCCTGATATGGCAGTACTTTGGCAGTGCCAAGGGCTTCTTTAGGCAGTATCCCGGGGTCAAATGGCATCCAGACGAACACGGGGTCATCGCCTTCGACTGCAGGAACAGGAAGTGGTACATCCAGGCAGCGACGTCTCCTAAAGACATGGTGATCCTGGTGGACGTTAGTGGCAGTATGAAGGGCCTGAGACTGACCATTGCCAGACAGACGGTCTCCTCTATACTGGACACACTGGGAGACGACGACTTCTTCAACATCATCGCTTACAATCAGGAGATGCACTATGTGGAGCCTTGTCTGAACGGTACATTGGTACGAGCAGACAGAAATAATAAAGCTCATTTCCGAGAACATCTGGACAAGCTGTTCGCCAAAGGGATTGGTCTGCTGGGTGATGCTCTGACCGAAGCGTTCACCATTTTAAATGATTTTAACCAGACTGGGCATGGCAGTGTGTGTAGCCAGGCTATCATGCTGGTGACTGACGGGGCAACGCAGATGTACGACGATGTCTTCGCCAAGTTCAATTGGCCAGACAGAAAGGTGCGCATATTCCCTTACCTGATTGGCCGAGAGTCTGCCTTTGCTGATAACATGAAATGGATGGCCTGTGCTAATAAAGGGTATTTCAGTCAGATCTCCACACTGGCTGACGTACAGGAAAATGTGATGAGGTATCTTCATGTTATGAGTCGTCCTAAAGTCATCGACCATGAGCATGACACGGTCTGGACGGAGGCCTACGTGGACAGCACTCTCTCCCAGGCACACAAGTCCAGAAACAAGAAGGGCCCAAGCCTGATGACCACTGTGGCCATGCCTGTGTTCAGCACCAAGAACGAGaccaAGAACCAGGGTATACTCCTAGGGGTAGTGGGCACAGACATTCCTCTTCAGGAACTCATGAAGATCATCCCTAAACACCTGCTGGGTATCCACGGTTACGCCTTTGCCATCACAAACAACGGCTACATCCTGACCCATCCGGACCTGAGGCCACTGTACCAGGAGGGCCAGAAGAGGAGGAAACCCAACTACAGCAGTGTGGACCTGTCAGAAGTGGAGTGGGAGGACAAGGATGACTTTCTGCGTAATGCCATGGTCAACAGGAAGACTGGGACATTCTCCATGGAGGTGAAGAAGACAGTGGACAAAGGGAAAAGACTCCTGAAGATGCACAATGACTATTTCTACACTGAAGTCAAGGGAACTCCCTTCAGtGTTGGAGTGGCTTTGTCTAGAGGCCATGGCAAATTCTTCTTCAGAGGAAACGTCTCAGTGGAAGCAGGGCTCCTTGACCTGGAACAGCCAGATGTTGCCTTGGCAGATGAATGGACGTATTGCAACACAGATGAGCACCATGAGCACCGCTCCCTCTCCCAGATCCAGGCCATTAAACTCTACCTGACTGGACGCAAGCCACACATCAAATGTGACAGGGAGCTGATCCAGGAGGTGTTGTTTGATGCTGTGGTCACAGCCCCACTGGAGGCCTACTGGACCGGCCTGGCCCTCAACAAGTCCGAGAACTCAGACAAAGGAGTGGAGATTGCTTACCTAGGCACACGCACTGGCCTCTCTAGAACCAGCCTGTTTGTTGTCCCAGAGCACCTATCCAATCAAGACTTCCTGACGGCAGAGGATAAGGAGGGGGTGTTCAACGCTGACCACTTCCCTCTGTGGTACAAGAGAGCAGCAGAGCAGGTTCCCGGCACCTTCGTCTACTCGATCCCCTTTGGAGGAAATGAGAATAAGAGTGTGGTTTTGGCCAGCACTGCCATACAACTGCTGGATGACAGGAAGTCGCCTATTGTTGCCTCCGTTGGGATTCAGATGAAGCTGGATTTCTTTCAGAGGAAGTTCTGGACTGCTagtagacagTGTGCCGCTCTGGATGGGAAGTGCACCATTAGCTGTGATAATGAGGACATCAAGTGTTACCTTATTGACAACAACGGATTTATTCTGGTCACAGAGGACTACTCTCAGACGGGGCTGTTCtttggagaggtggagagtgcTGTTATGAACAAGCTGCTTCTCATGGGCTCCTTCAAAAGgATCACTCTGTATGACTACCAGGCTCTCTGTAGAGTGTATGCTGGCAGCAGTGACAGCGCCCGCTCTCTATCACATCCCTTCTCCATCGTGAAATGGCTCCTGACCAAACTTGTCATTTTCCTGCTGGAGTTCAACCTTTACAGCTGGTGGCATGTTGATCTCTCAGTCAAAGCCCAAAGGTCGAGGGGAAAGACCATGATGGTGCCATGTGACACGGAGTACCCTGCATTTGTCTCTGAGCGTACCATCAAAGAGACCACGGGAAACATTGACTGTGAGGGGTGTGCCAGATCTTTTGTAATTCAGCAGATTCCCAGCAGTAATCTCTTCATGGTCGTCGTGGACAACAAGTGTGACTGCAGCTCTGCCCCCCTGGTTTCCATGGATCCCATCGAGATTATATACAATGAGTCTCTGAAATGTGATAGGCTGAAGTTTCAGAAAGACAGAAAGCGGCCAGAAACGTGTCATCCTTTTCACCCCGAGGAGAATGCCATGGAGTGTGGAGGAACAGCAGGCCTCTCTGCCCCCCTTACAGCAGCACTGCTCCCCCTACTGGCCACTTTCATTAGCAGGTGACCACACCGCCCTCGAGGCCCACCTTCCTGGACCCAACACTGGACCTAACACTGGAGAGATTGATAGACTGGCGCACCATCAAATGCTGACAACGCACAGGGAGCCTCGCCAACAAGAAGAACTTGCTCACAACTGAGTTACTTATTACCAACAGAGAGATGGACCAATTGTAAATCAATCTCCCTGACCAGCAGAGAAATAACAAATTAGACATTGTTCAAGACAAACAGAACAATATTCAAAGGGGGAAACAATATGGACTTTAGACAGAAAAAATATACCTGAGAGCAGCAATGAACGGGTTTCACAGGATGACAGAAAGGACATAAGATCAGTTGGATAACAAAGCCAGCCCTCTGGGATGTAGGAACTATCTTCCTTTATGTGCAGTCAGTGAAATCATTACCATGTTGATTTAAATCTCAGTTGGTTCACTCCACATTAGCGTTCCAAAATACTTCTACACTCTCACAGCTGTAATACGCTGACTGTGCAAGCGGCAAGACAGGATTTTACAGAATAAAAGATCCACTTTTCCCTACGTTCAGACAACA

Function

NR:

description
voltage-dependent calcium channel subunit alpha-2/delta-3

GO: NA

KEGG:

id description
K04860 CACNA2D3; voltage-dependent calcium channel alpha-2/delta-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570293.2 True 4363 mRNA 0.50 38 49604663 49657967

Neighbor

gene id symbol gene type direction distance location
cacna1da LOC106583449 coding upstream 10163 49478916 ~ 49594500 (+)
LOC110494034 LOC106565158 coding upstream 285046 49309152 ~ 49319617 (+)
LOC110494028 LOC106565296 coding upstream 484246 48977901 ~ 49120417 (+)
LOC118940474 NA coding upstream 568739 49033962 ~ 49035924 (+)
LOC118940102 NA coding upstream 624096 48977636 ~ 48980567 (+)
LOC110494957 qrich1 coding downstream 523078 50181045 ~ 50192699 (+)
LOC110494976 LOC106565138 coding downstream 539136 50197103 ~ 50207320 (+)
LOC110494984 LOC106565139 coding downstream 564674 50222641 ~ 50229675 (+)
rhoa rhoa coding downstream 575680 50233647 ~ 50239667 (+)
zgc:112334 LOC106565137 coding downstream 594840 50252807 ~ 50259008 (+)
G1458992 NA non-coding upstream 15781 49587952 ~ 49588882 (+)
G1458935 NA non-coding upstream 128704 49475545 ~ 49475959 (+)
G1458931 NA non-coding upstream 133231 49470914 ~ 49471432 (+)
G1458927 NA non-coding upstream 135102 49469281 ~ 49469561 (+)
G1458998 NA non-coding downstream 6539 49664506 ~ 49664931 (+)
G1458997 NA non-coding downstream 8531 49666498 ~ 49667783 (+)
G1459027 NA non-coding downstream 11244 49669211 ~ 49669740 (+)
G1459030 NA non-coding downstream 14154 49672121 ~ 49672345 (+)
G1459052 NA non-coding downstream 49943 49707910 ~ 49773572 (+)
G1458807 NA other upstream 165334 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 564307 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 883419 48693321 ~ 48814670 (+)
LOC110494013 LOC106565177 other upstream 1180258 48389082 ~ 48424478 (+)
glrx LOC106565191 other upstream 1568080 48030892 ~ 48036585 (+)
atxn7l2a LOC106565127 other downstream 772840 50427145 ~ 50437612 (+)
G1459769 NA other downstream 1118562 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 1236973 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 1422165 51080132 ~ 51137770 (+)

Expression


Co-expression Network