slc25a20 (slc25a20)


Basic Information

Item Value
gene id slc25a20
gene name slc25a20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50283097 ~ 50289549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570329.2
CCAAAGCAATTGTGTAACAGACAATTCGGTCCGGGCATATATCTGGGTGAAAGGTCCACATTGGATGACACGACGGTGGCTGTCAAGAAATATACCTTTCATTTGAACCGATAGTGGTGACACAGGGTTAACCTGTTAGGTAGATAGTTATTTTCCCAACTTGTTACGGATCGTAACAACGCAACATTTTGCGTTTTTCTTTTCTCGTTAGCTGTCTTTTCTTGAACAGAACCATGTCTAAACAGCAGGCGATAAGTCCAGGGAAGAACTTCTTTGCTGGGGGCTTTGGGGGTGTCTGCTTGGTCTTCGCTGGACATCCACTTGATACCATAAAAGTGCGCATTCAGACCATGCCTGTGCCCGGCCCTGGCGAGAGCCCCCTGTATAGAGGCACTTTTGATTGTTTCAAACAGACCCTTGCCAAAGAGGGGTTCAAAGGCCTGTACAAAGGCATGGCAGCCCCTATCATTGGAGTCACACCCATGTTCGCTGTCTGCTTCTTCGGCTTTGGCCTGGGCAAGAAACTACAACAGAAAACCCCTGACGATGTCCTTACGTATCCACAGCTGTTTGCTGCCGGCATGCTGTCAGGCGTGTTCACCACAGCCATCATGGCCCCTGGAGAACGTATCAAGTGTCTCCTACAGATCCAGGCGGCCAAAGGGGAGGTGAAGTATGCTGGGCCCATGGACTGTGTGAAGCAGCTGTACAAAGAGAGTGGGATCAGGGGAATCTACAGAGGCACTGCTCTCACCCTCATGAGAGACGTGCCAGCCAGTGGGATGTATTTCATGACCTATGAGTGGTTGAAGCGCCTCCTCACACCAGAGGGCAAGAGCCCCAATGAGCTGAGTGTTCCTAGTGTTCTATTCGCTGGAGGGATGGCAGGAATCTTTAACTGGGCCGTGGCCATTCCCCCTGATGTACTCAAGTCTCGCTTCCAGACAGccccTGAAGGGAAGTACCCTAATGGTTTCCGGGATGTTCTACGAGAGCTACTGAGGGAGGAGGGCGTGGCCTCTCTGTACAAAGGCTTCACCGCTGTCATGCTCAGAGCTTTCCCTGCCAATGCAGCTTGTTTCCTTGGGTTTGAAATGGCCATGAAGTTCCTGAACTGGGCAGCACCCGGTCTGTGATCCCTGTCCAAGCCCCAGGCGTAGACGTCAGAGACAGAACTCACTAACACAGTGGAGACCGACAGTACTCACATACATACACTTACGCAGAGGTACACATTGAACGTCTGACTGGCATACGGACTGAGAAAGACGCACACATTGTAGAGGTGGACAGAGGGGGGGAACGCACACATTGTTCTCACTCCTTGGTGTTTTACTTGCATTTGtttagttttttgtgtgtttttaattAGAACATTTGTGAATTGAACATGTGCCTTTACTTACTCAGTGAGTCTGCATATCAGGGAATAGGTACATTTTCACAGGGTGCGTATAATGTGTGTTAGTAtgccgtgtgtgtgcgtgtgtctctctgttgtgtgtctctgcgtgtgtgtttaAACACAAAACATATGGCTTTTAAAACATACCAGTACATTAAAACATCCCTGAATAGTCTCATTCCAAACTGTGATCCAGTAACCAAATCACTGAGTTGGAAATTGATAGTAGATTTATTAATGAATTAATGAATAATACTTTTCTCCAAGGTTGTTGCAGATGTAACTTATGCCACAACATGGAGAACCATCATTGGGCCATTGTCTCATGTTTGTATGTGTCATTAtgtatgtaaataaataaataaatacaatgaaaTCAT

Function

symbol description
slc25a20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in visceral fat. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).

NR:

description
PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0006810 transport biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570329.2 True 1785 mRNA 0.47 9 50283097 50289549

Neighbor

gene id symbol gene type direction distance location
LOC110494960 nckipsd coding upstream 2388 50263347 ~ 50280709 (+)
zgc:112334 LOC106565137 coding upstream 24089 50252807 ~ 50259008 (+)
rhoa rhoa coding upstream 43430 50233647 ~ 50239667 (+)
LOC110494984 LOC106565139 coding upstream 53422 50222641 ~ 50229675 (+)
LOC110494976 LOC106565138 coding upstream 75777 50197103 ~ 50207320 (+)
prkar2ab LOC106565134 coding downstream 729 50290278 ~ 50301818 (+)
LOC110494986 LOC106565131 coding downstream 92523 50382072 ~ 50386942 (+)
LOC110494971 LOC106565129 coding downstream 110798 50400347 ~ 50402864 (+)
sypl2a LOC106565128 coding downstream 119127 50408676 ~ 50422865 (+)
atxn7l2a LOC106565127 coding downstream 137596 50427145 ~ 50437612 (+)
G1459494 NA non-coding upstream 68686 50214036 ~ 50214411 (+)
G1459493 NA non-coding upstream 69144 50213753 ~ 50213953 (+)
G1459492 NA non-coding upstream 69635 50213231 ~ 50213462 (+)
G1459490 NA non-coding upstream 72107 50210735 ~ 50210990 (+)
G1459480 NA non-coding upstream 106142 50176692 ~ 50176955 (+)
G1459518 NA non-coding downstream 7914 50297463 ~ 50358790 (+)
G1459510 LOC106565133 non-coding downstream 14582 50304131 ~ 50310362 (+)
G1459562 NA non-coding downstream 79500 50369049 ~ 50369289 (+)
G1459568 NA non-coding downstream 91225 50380774 ~ 50381005 (+)
G1459570 NA non-coding downstream 101718 50391267 ~ 50391700 (+)
LOC110494957 qrich1 other upstream 99401 50181045 ~ 50192699 (+)
G1458807 NA other upstream 843768 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1242741 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1561853 48693321 ~ 48814670 (+)
LOC110494013 LOC106565177 other upstream 1858692 48389082 ~ 48424478 (+)
G1459769 NA other downstream 486980 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 605391 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 790583 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3884465 54147039 ~ 54189617 (+)

Expression


Co-expression Network