fbxo42 (LOC106565130)


Basic Information

Item Value
gene id fbxo42
gene name LOC106565130
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50364407 ~ 50380405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570302.2
TTCCTCCATTCACGATTTACGTGCGCGCTCCCGCGTTGCGAAGGACGCTGCCACTGAGGAAGATGGCGAATGCTTGGAGTATGGCGATTTACTGCAGAAGCTGATAAAGGGAATGAGAAGAGAGACGTCAAAAGATAGAAAACCAGCAAAATAATTCGTGCAGAATTACGAAAGAAAGAATGTCCCGCTCCTCAGACAGTGAGGATGGATACTTTGTTGCCATGGATACAGAGGAAGATGGAGCAGGTCCTGTTGGATTGGCacaggaggaagaagagaagatgGGGAccaacagaagagagagggaccTAGAGGGATTAGTTGAGGGCGAGAGGACAATGGTGGAGCTACCAGAGGAAGTCCTAGAATACATCCTGTCCTTCCTTTCACCTTACCAGGAGCACAAGACCGCTGCACTGGTGTGTAAACAGTGGTACCGCCTCATCAAAGgtgttgCATATCAGTGTTACCATGGTTTTCTGCGGGCCGTCCAGGATGGCTACATCCAATGGGAGAGTCGTACATACCCATATCCTGGAACACCCATCACTCAACGCTTCTCACACAgtgcATGCTACTATGACTCCAACCAGTCCATGTATGTGTTTGGGGGCTGCACTCAGAGTAGCTGCAATGCTGCCTTCAATGACCTGTGGAGACTTGACCTCAACAGTAAGGAGTGGATCCGCCCTTTAGCCTCAGGCTCCTATCCGTCTCCTAAAGCGGGGGCTACCCTGGTGATGTACAAAGACCTGCTGGTGCTGTTTGGTGGATGGACTCGCCCCAGCCCCTACCCACTGCATCAGCCAGAGAGATTCTTTGACGAGATCCACACATACTCCCCTTCCAAAAACTgGTGGAACTGCATCGTGACGACCCACGGTCCCCCGCCTATGGCCGGTCACTCTTCCTCTGTCATAGGGAGCACCATGGTGGTGTTTGGAGGGTCACTAGGGGCACGCCAAATGAGTAACGAGGTGTGGgttctggatctggagcagtggtCCTGGTCCAAGCCAACCATCTCTGGCCCGTCCCCCCACCCACGAGGAGGCCAGTCTCAGATTGTGGTTGGCAACGAGACTCTACTTATTCTGGGAGGCTGTGGAGGCCCTAATGCGCTGCTGAAGGATGCCTGGCTCCTCCACATGGGTGCCCCACCCTGGACGTGGCAGCAGTTGAGGGTTGAGAACGATGACCATGGAGCCCCAGAGCTGTGGTGCCACCCCGCCTGCAGGgTTGGGCAGTGTGTGGTGGTGTTCTCCCAGGCTCCGTCTGGCCGTGCGCCCCTCAGCCCCAGCCTGAACTCTCGGCCCTCACCCATCAGTGCCTCTCCCGCTCCCTTGGGCACGGAGCCCCCTTCCCTGCGCTCCTATTCCCCTGTGAGGAGCGGAGCCGCCGGGGTCGTACTGGGGGCCGCTGAGGAAGCCCCCTGTGTGAACGGCCGCTGGGGCACACTGAGACCCCGTCCCTCGGCCAGAGGGGGTGCCAGAGAGGGTAGCCCCggctcctcctctcagcagccatCCCCCTCCCAGGGTCCTGACAGCCCgcctcttccatccctccatccactaCTCGACGGCTCGTCCCCCTCTCCCAGGACCAGCCCTGCCCAGGCAGCCTCCCCGCCCTCTCACCCCCCTGTCTCGTCGGACTACGGCTGGGAATCTACTCTTTCTGCCACCCACCCCCTTTCTGCTGAGGTACTCAGCACTAATGGAGTGCACACACCTCCCCCTGCTCCTGGTTCCCCACTCACTCCACCGGGGGCGGTGTCCCCTGCTGCCCTGAGACGGGGCCTGGAGGCTGTCAAAAACCCGTCCTCTTCATCCATGCCATCGTCCTCAAATCCATTGTCTCAAGGGGCTGCTACAGGAGTAAGTGGAAGCGGGGGAGGCGGGGCTTCAGCGGGAACCTCCCCCTCATCCTCCAGCCCACCACAGGTTGCCGCTGACGGACACACCATCCCGCCCATCGCACGGCGGCTTGGCCATCACCCGCCCCAGAGCCTGAACGTGGGCAAGCCCCTGTACCAGTCGCTCAACTGCAAGCCCATGCAGATGTATGTACTGGATGTGTCCCGAGCCAAAGGGGACGGTCTTGTCTCCTGGAGGGTTTACGGTAACGGAACCCCCGCCGCCGTCACGGGTCCCCCCGAGACGAGCCTCCACACAGTGGTCCAAGGGAGGGGTGAGCTCATCATTTTCGGGGGCTTGATGGACAAGAAGCAGAACGTGAAGTACTACCCTAAAACCAACGCCTTGTACTTTGTACGCGCTAAGAGGTAATGTAACGACGGACAGGGTCGTGAATGATGCCAGAAAGTGTTGCTAAGTAACGGACGATCAATTTTCCATCCTGACCCATACAAGGGAAGTGAAACAAGGTCTTATTCCTCTACCGCAGAGGATCATGGGAAAATAACATGTCACACTAATTCTTGGCGTTTCTTTCTTCTCACACTAacttctctccctctacttctctctctaccccctcttccTATCGCATAACTTCAAAGAATATAACATTTCAGACAGTACATTTTAAGGACGTTGAGGGTGTTGTTGCTATGACAGTGAGGATTGGATGAATGGGTATCCTGACCTCCCAAcacctgcagtgtgtgtgagatggTTGGTCAAATGGCCCGACAGGACAGCAGTTTTTCCATTGATCCCTAAAGATTTACAGTTTCTGTTCCTCTTCGGTCTCCCCGCTGTgcactgagagggagagaaaagaaaaTGGTTGACCGAGCCCTGTGCTGAAGAGGGAGGAACAGTGGAAGGCTGACTACTTTGCTTTTTTAATCACTCTATCAGCCTGCATTGTTTACATTGAAGAGTGTAAGTGCGTGTGAAAGCGTGTATGTTGCTGTTGGGTGTGAGTGCGTGTGGGTGTAAATGCTATTGTATGTTGATTtgggtttttttttgggggggggggggggggggggttgcagtgTACTGTAAGCATAGTAAAACAATAAAAGCCTAATTGTCAAAACTCATGTTTCATTAGGTGTTAATACATTCCCTTTAAGTAGTTGATTCATTATGTCCTGGAAGTATTTTGTTATTGGGTCATCACCAGGCTATGCTGCATCTTACAAAATAACGGTTATAAATAAACACATCCAGTAAAGACCTGCTTGGCATAACCTTGATGCAgtagtaaacattacacaactgACGGGAACGTCGAGACTCCGGAGTAAATTTCCTGATATGCGGGCCCAAGACAACGGGTGGAATGTTCTGATGttaatatCAACTCTCCAGGATCCTACTgacctacccatgagccccctcttTTTCCTTTTACTCTAACCAACATCCTTACCCACTGAGCACCGACCGACACAGGAC

Function

NR:

description
F-box only protein 42-like

GO: NA

KEGG:

id description
K10317 FBXO42; F-box protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570302.2 True 3374 mRNA 0.54 11 50364407 50380405
Loading

Neighbor

gene id symbol gene type direction distance location
slc25a34 LOC106565132 coding downstream 1323 50349819 ~ 50363084 (-)
fblim1 fbli1 coding downstream 18268 50336611 ~ 50346335 (-)
LOC110494951 LOC106565133 coding downstream 32010 50300923 ~ 50332397 (-)
ndufaf3 ndufaf3 coding downstream 101138 50260850 ~ 50263269 (-)
LOC110494973 tmem43 coding downstream 117339 50239966 ~ 50247068 (-)
zbtb40 zbtb40 coding upstream 65400 50445805 ~ 50455730 (-)
usp48 LOC106565123 coding upstream 79137 50459542 ~ 50483933 (-)
LOC110494987 LOC106565122 coding upstream 126240 50506645 ~ 50507861 (-)
LOC110493202 LOC106565118 coding upstream 163382 50543787 ~ 50556328 (-)
LOC110494979 LOC106565119 coding upstream 178867 50559272 ~ 50577517 (-)
G1459922 slc25a20 non-coding downstream 74871 50285956 ~ 50289536 (-)
G1459917 nckipsd non-coding downstream 83707 50278420 ~ 50280700 (-)
G1459890 NA non-coding downstream 113563 50250633 ~ 50250844 (-)
G1459873 NA non-coding downstream 131193 50232878 ~ 50233214 (-)
G1459941 NA non-coding upstream 1322 50381727 ~ 50382043 (-)
G1459943 NA non-coding upstream 10960 50391365 ~ 50391787 (-)
G1459944 NA non-coding upstream 12195 50392600 ~ 50392826 (-)
G1459952 NA non-coding upstream 23138 50403543 ~ 50404039 (-)
G1459953 NA non-coding upstream 23775 50404180 ~ 50404451 (-)
LOC118940151 NA other downstream 189814 50173658 ~ 50178053 (-)
G1459325 LOC106565145 other downstream 328895 49991563 ~ 50035512 (-)
LOC110494969 LOC106584726 other downstream 406144 49953456 ~ 49964331 (-)
G1459333 LOC106584726 other downstream 598338 49727352 ~ 49766069 (-)
G1460128 NA other upstream 374529 50754934 ~ 50760996 (-)
LOC110494046 LOC106565111 other upstream 486822 50862652 ~ 50875481 (-)
G1460539 NA other upstream 618349 50998754 ~ 50999404 (-)
LOC110494054 LOC106565105 other upstream 682839 51063244 ~ 51077345 (-)
G1461521 NA other upstream 1366511 51746916 ~ 51761022 (-)

Expression

fbxo42(LOC106565130) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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fbxo42(LOC106565130) Expression in each Bioproject

Bar chart with 21 bars.
fbxo42(LOC106565130) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network