LOC110494986 (LOC106565131)


Basic Information

Item Value
gene id LOC110494986
gene name LOC106565131
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50382072 ~ 50386942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570341.2
TTCCCGATGAACATGTGCAATGTCGATACAGTAGAGGTCGCTGTTgattctgtatttttttgtttttgactGCTTGGTTTTCGATTTCGCATCGGCGCAGACATCCAGCTAGCTACAGCGTGTGTTTGTATCTTGAACACTGAGCTCGTGTGTGGGTCTTGGACGCTGTAATATGGAAGATGAAGAGGTTTGCGAAAGCTGGGAGGAAGCTGCAGACAGCGGGGAAATTGAGCGAAGACTCGAAGCAAAGTTGAAGATAAGCCAGAAAACAAAGAAATCCTCCATCGGCCCAGGTAGCTCCCCTATACGAACTGCCATGGTTATCCAGGATGAATCTCAACCTGCAGCCCCCCCACCTCAAATCCGAATTCTGAAGCGCCCCTCAAGTAACGGTTCCCTAGGGTCAACTAGTTCATCTAACCGCCCCACCCAGCAGCCGAAGTCACTGGCCCAGCGGGAGGCAGAGTATGCTGAGGCCCGCAGGAGGATTTTGGGTAGTGCTAGTTCTGAAGAAACACCTCAGGACAAACCCAGCCAAGACAGACCAGTGCGAGtgagtgcccagccacagccagAACCGGTTCGTCCAAACAATCACCTGATCCGCCAACCCACTGGCCCAGACGGCACCACAGGCTTCCGTCACTGCAGATAGAGtgcagaagggagagggggatccATCGTCTCCATGGGGGCATGGTGTGCAGGGGATAAAGGGGGAGGTAGCATAGTGCATGAAGAGCAGAGTGGTGGGATGAAATTGAAAAAATTAGATTAGGACAAACAGAATATATTGGCCCACAGAATGAGATGAAGTATCCCTCCCACCCCTTTCTGCTGACTGTTGGTACGCTCATTGCCTTTCGCCCTCTGCCCTGTCTCCAGCCTGCGCAGAGGGTTGCAGGGAGATGGCAGAGAGGAGCTGAGTGTCAAGTCagatctcctctctgtcccacACTGTGACAAGGGCAGTCCCTCAGGATTCCACACACTGTGATATCTCCCATGATGCACCCTGAGCTGCCCCATGCCCCTctccactgtccctctcctgCTAAGGACCAGGGTCCTCCTAGGTCCCGGGCATACCTGCCCTCCAGGGAAATGACAGACTGGTTCTGTGGGACTGAAAGGTGGCCAGGGGGAAGTGAGGAAGGAACCTTGCTCCGGGTGTGAGTGTAGGGCCATGGATAGAGCAGGGGAGTGACAAGGTGCCACTTCGTGTTAGCATGTTCAAGCAATAATTCCGAAATCAACATGTAAGCCCCGCCTTCTTTAGTTAGACTGCCTGTGCTGTATCTGTTAATATTCGTCTGTTTTGTTTTTAAgttatttcaacaacaaaaaaaacattttactgtaattttatttttctttgtttttttgtttaacaTCTGGGCAGTAACTGAATGGCGAATTTGGGAAGGTTGTTAGATTAATGGTGTCTTCTGTTATTGCatctagttttttttaaattcatgtctGTTTTCAAAGTGGGAATGATAtagaagaaaagaaaaaaaatgacaaatgTTAGTGAAGCTGAATGTTTTATAGCATCTTATACAGGTAGTCATTGAAAGTAGTAGCCATTTTTGAAACGATACTGTAAGTATATGTTGAGATTAGGAGAAAATAGTTTATGGATGGCCAAAAAGTAATCCTGTAAAAATGTCCACACTGCGTGGCCTTGTTGCTTCATTTGCGAAGAGAGGGGCCACCGATGACAAGGAGCATGAAGAAGGCCATCGCTTTCTTTTGATTCAGGGTTGTTTGAAGAGGAAGCCATTGGCTGGGAGTGTTTTAAGCAGcacctctgttctgtcctgtctttcATTCTGTCTCTCCAGGGTTGCCTTACTTGGAGAGAGGAGCACTTGTTCTTTTACGTTAAAGACATGCTGGATCAAGGAGAATGACAGAATAACAAACTGAGTTAGATGGAGATTGACATAAAGTTTCAATTTTTGCTTGGTTAGAAGGCAAGTTATTGTTAAAGAGAGTGCCAAAGTTGAAAGGAAGCCCTTTTATCCCCAGTGGAGGAACATGTCATAGCTCTGTCTATCCAATCTATGTAGTTTTGTAAATGAAATGACAAGAAACTACATCTTGGCTGTTTTAAACCATAGTAAATGTGTTGACTCAAACGCCTTAAATTATCTTTGGTTTCATATTGGACCCCACAGTAACTGAGGCACCTCAGGTTAATGCTCTTGGATGCTGAGATTTAAACCCCCCCacctcctaaaaaaaaaaaaaaaaaaatatcctccctgtaacctctctttctctaatTTCTGTCAATTGGCCCGCCTTAGAACCTCAGGAAAGGTGGTTTTGTTGGCCCCTCAGGCAGGTTTTAATGCTGGAGTGGCCAAGCAAAGTCTTTGGTCTGCTCACATGTAATCCCAGTGATGCAGTGACTGGCTGGAATTGTTGCACAGCCTAATATGTAAAGAAAATCACACCCAGTAACCTTATTTGGGTGTGATTTGGTTCTTATTTGGACTATACCTAGAGTATGTTACGTCTGGGCCATTGAAGAGTACTCAACCTCATCCTTTATCCTTTCTAGGGATCACTGAGCAGAGAGGGCTGGACAGGTGAAAGCAATACGGTGGAGAAACCCAGGTGGATTGTAGAAACCCCTGGGTGCGGTTTCCATACCTGTCTTGTCTACATGGATCAGAGATCAGcttggggaagggagggaggaggagactagAGTCTAACCCTGGATTAGTATGATCCTCCTGAACAGGGTTAGGCTCAATTCAGTTTAATTCAGGAAGCGAATTGAAATGTAATGCTTGAATAGAAAATAGATTTTTTATTTCTGAGGATTTATTCCGTTTGTGAAGTGAATTTAAATTCAAAACCGAATTGACCCCAACGATGCGCTTGATGAGCCTGCGCAATTCCAGTAACTCAGCCATCGGATATGGGGCGGGGCGACAATGAAGAGATTACGCTTTTCTCTTCTGTCATGCGAACACAACAAACAAATCAgcctgtaaagttttttttaaattcccttTAATAAAATAATATTGAAAAGTAAAGTTAAACGCAATTGCAAATATTTTTGTTTGGTGTAGagttttatttttctattttgtgaaatgGAAAATGTGCATGTACTTTTAGTCAAATATTAGTGGTTTTACAGATACCAAGCATAGCTGAAACCATAACCTTAAATGTCCCTCAATGACTACAGGAAGAATTTCAAATGCATTAATATGACAGAATTTTTTGAGCAATCATGTGAATATGATATTCTGCACAACCAACATAAATTGCATTTCAGAAATGCTTAATGCAACCATTGTCAATTTTGGTCAATGCCCAATGAGCTCTTTGTGTGCTTTTGAAGTTATACCTAATGTACAATTATTTAAATTTTTTAACTTTCAGTTAGGCTAATGCTTGAAATTATTATTCTAACCTAAACCATAGCAGTAAGAACTCCATATATGGCTAACTTACTCTCATATATTTTATTGAGCTGTTGTAGCTTTAAAATGAGTATGGTGCCAGACATTTCAGATTTCCCCTTGGAGATATTTAATAGTCtgtcctgttaaaaaaaaaaaatcttaaaccCCGCAGTAAGCACCATTGACATGCATCTTGTGTTCTTACTAACCTGATCTAAAAATGTGTGTGAAGTGTCGTCCTAATGTATATCTCCTTGGAACTGTCATATCATTGAACACTTGTGTCCTTTGTTTGTCTAGCCCAACACACTACAACAGTGGTATTCAACATTTTTCGGGACCCCATTTTTTTTTCACTGTTTTTTTCTCACGACCCCACACCAAATCAAATGACACAACGTTCAAATCGGTACATTTCtatttttacatcaacaaatagCCTTCACGTCGTaccattttcaaaataaaaataaaaccaaAAA

Function

NR:

description
SUZ domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570341.2 True 3922 mRNA 0.43 4 50382072 50386942

Neighbor

gene id symbol gene type direction distance location
prkar2ab LOC106565134 coding upstream 80254 50290278 ~ 50301818 (+)
slc25a20 slc25a20 coding upstream 92523 50283097 ~ 50289549 (+)
LOC110494960 nckipsd coding upstream 101363 50263347 ~ 50280709 (+)
zgc:112334 LOC106565137 coding upstream 123064 50252807 ~ 50259008 (+)
rhoa rhoa coding upstream 142405 50233647 ~ 50239667 (+)
LOC110494971 LOC106565129 coding downstream 13405 50400347 ~ 50402864 (+)
sypl2a LOC106565128 coding downstream 21734 50408676 ~ 50422865 (+)
atxn7l2a LOC106565127 coding downstream 40203 50427145 ~ 50437612 (+)
LOC110494981 LOC106565126 coding downstream 51728 50438670 ~ 50445648 (+)
ldlrad2 LOC106565124 coding downstream 101782 50483057 ~ 50500086 (+)
G1459568 NA non-coding upstream 1067 50380774 ~ 50381005 (+)
G1459562 NA non-coding upstream 12783 50369049 ~ 50369289 (+)
G1459518 NA non-coding upstream 23282 50297463 ~ 50358790 (+)
G1459510 LOC106565133 non-coding upstream 71710 50304131 ~ 50310362 (+)
G1459494 NA non-coding upstream 167661 50214036 ~ 50214411 (+)
G1459570 NA non-coding downstream 4325 50391267 ~ 50391700 (+)
G1459575 NA non-coding downstream 17434 50404376 ~ 50404630 (+)
G1459582 NA non-coding downstream 36873 50423815 ~ 50424018 (+)
G1459583 NA non-coding downstream 37443 50424385 ~ 50424786 (+)
LOC110494957 qrich1 other upstream 198376 50181045 ~ 50192699 (+)
G1458807 NA other upstream 942743 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1341716 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1660828 48693321 ~ 48814670 (+)
LOC110494013 LOC106565177 other upstream 1957667 48389082 ~ 48424478 (+)
G1459769 NA other downstream 389587 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 507998 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 693190 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3787072 54147039 ~ 54189617 (+)

Expression


Co-expression Network