LOC110494971 (LOC106565129)


Basic Information

Item Value
gene id LOC110494971
gene name LOC106565129
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50400347 ~ 50402864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570316.2
TAAAaccactgaagaagaagaagaacttgGGCAATATCTTCCCCTCTTCCCAATTTGCAAAGGATGGTGGAATATTGACTGGACTAGGATTCCCTTCACAATGTTAAAATTACAACTATTTAACACGTTTCTTACCGACCGATTATCAGCGGCCGCTGTGGAAATATCTGGGGCATTTAAAAAATCGTTAGCAGAGTACCAGGAAGAACTATCCCGTTCAAAGGAGGAGATTGAACGTCTACAAAGGATGCTAGATTTGGTTTTGGAACCCGAGATAAAGTTACATGGAACAGAAGTGGTTTCTCCTGTGCAGAGTCAGCAAGAGGGGAGCCCCAGTTTGGGCCAAGACCCAGATCCCACACAGATTAAAAATGAACAGGACCCTGAGCCAACACAGATTAAAGAGGAAGAAGACCTCAGGACCAGTCCGAAAGATCACACACAGATTAAAGAGGGGGGGGGAGTTCTGGGTCAGTCAGGGCGGAGACCAACTTCAAGGGCTGGAGTCTGATATAAGAGTTCATATTCAACCCTCCCTATATTAAAAGTGACTGATCAGGACCCATCTCAACCCTCACACCTTTACCAAAGTCAAAATGTAAAGAACAGACTTAGTGACTCTCTACCTACCAACACAACTGAGCAGATGGAAACAGAAGTGAATGAAGAGAACTACAGTGTCTCTCAGCCCTTCTCTGCAGTAAATTCAGAGTGCTCTGCTGATGAGACTAGAACAAGAGAAAATGCTTGGGTTGAGAAGGGAGAAACATCGTCAGGGTTAAAGCGGAGTTGTGAAGGCAAAAAATACTGTTGCCATGTCTGTGGCAAATGCTTCGCACACAATACTAATCTGAGAATCCATAAGACTGTTCACACAGGGGGGGGAAGCCATATAAGTGCAAAGACTGACAAATGCTACAGTGCAAAGGCAGACCTGGTAAGGCATATGAGGAATCGTCATTATTGGCCAGGGCATGTTCTAGGAGGACATTTTAATCAGGAAACCCATCATACTGTGACAAACAAAGATGCTTTATTAATGTGTGATGACAAGGAGTTGCTGGGAAGATACAGGCTTGATCAGGCAGGAATTACGTTTGTATTGGAGTTAGTCAGAGACTCTCTCACGTCGTCAAAACATCAATGTCAAGCCATTTCTCCTGAAGTTAAATTACTAATAACCCTGGGTTACTTGGCCACAGGCAAGATGCTACCGTGCAGTAGTGACGATTTGGGACTGTCAAGCTGTTCTATAGCTCATGTCAGAATGGTGATATCACAAACTATCAATGCCCTCTCAGATCCTCAACTAGTAGGCCAGTTCGTTGCCTTCCCGCAAGATGCCAGCCAGCTCCAACACAACCAAGCTAGGTTTAAAGCAATAGCTGGCTTCCCCAGTGTTGCTGGAGTCATTGGCACAACTTTTAGAAGCAGCTCAGTATTAAGTACAACATACAACAAGGAGTTCAATAATTTCCCTGGAGACCCAATTATTTTAATCAACACCCACGTGGTGTTCGATGCACACTGCAAGGTTCTCTATGTTGTGCCGAAGAGCGTGGATCAGGAGATACTGAGTGAGGTTGGCCTCAAACAGATTGAGGGGCTTCTTGCGCTTGCTGGATATCACTTGTTGGGGGACAGTGGATACCCCTGCAGACAATGGCTGCTCACATCTTACCTCCATCCACTGCCTGGCCCACAGTTCAACTACAAAAGGGCACTTAAGAAAACGAGATGTAATGAGGGCCATCAGCCAAATGAAGAGGAGATTTCCCATCCTGCAAGCATGATGGCTGAAGAGAATGGGCCAGTAGAGAGCCTGCCCCCAAGTGATCTTCACTACAGACTCTACTTTACTGATCTACATTTCAAGTATGCTGTAGAACAGACCCTGAATGTGTGGCTATCACAAGTACTGTACATGAGTTAGCTACAAACGATATGGAAATATGTGTTTATCGATCAGTTACAGTTCAACTGTCACAAGGGTGAGTTATTGTTGATTTTAAGAATAAATCATTAACCC
>XM_021570317.2
TAAAaccactgaagaagaagaagaacttgGGCAATATCTTCCCCTCTTCCCAATTTGCAAAGGATGGTGGAATATTGACTGGACTAGGATTCCCTTCACAATGTTAAAATTACAACTATTTAACACGTTTCTTACCGACCGATTATCAGCGGCCGCTGTGGAAATATCTGGGGCATTTAAAAAATCGTTAGCAGAGTACCAGGAAGAACTATCCCGTTCAAAGGAGGAGATTGAACGTCTACAAAGGATGCTAGATTTGGTTTTGGAACCCGAGATAAAGTTACATGGAACAGTGGTTTCTCCTGTGCAGAGTCAGCAAGAGGGGAGCCCCAGTTTGGGCCAAGACCCAGATCCCACACAGATTAAAAATGAACAGGACCCTGAGCCAACACAGATTAAAGAGGAAGAAGACCTCAGGACCAGTCCGAAAGATCACACACAGATTAAAGAGGGGGGGGGAGTTCTGGGTCAGTCAGGGCGGAGACCAACTTCAAGGGCTGGAGTCTGATATAAGAGTTCATATTCAACCCTCCCTATATTAAAAGTGACTGATCAGGACCCATCTCAACCCTCACACCTTTACCAAAGTCAAAATGTAAAGAACAGACTTAGTGACTCTCTACCTACCAACACAACTGAGCAGATGGAAACAGAAGTGAATGAAGAGAACTACAGTGTCTCTCAGCCCTTCTCTGCAGTAAATTCAGAGTGCTCTGCTGATGAGACTAGAACAAGAGAAAATGCTTGGGTTGAGAAGGGAGAAACATCGTCAGGGTTAAAGCGGAGTTGTGAAGGCAAAAAATACTGTTGCCATGTCTGTGGCAAATGCTTCGCACACAATACTAATCTGAGAATCCATAAGACTGTTCACACAGGGGGGGGAAGCCATATAAGTGCAAAGACTGACAAATGCTACAGTGCAAAGGCAGACCTGGTAAGGCATATGAGGAATCGTCATTATTGGCCAGGGCATGTTCTAGGAGGACATTTTAATCAGGAAACCCATCATACTGTGACAAACAAAGATGCTTTATTAATGTGTGATGACAAGGAGTTGCTGGGAAGATACAGGCTTGATCAGGCAGGAATTACGTTTGTATTGGAGTTAGTCAGAGACTCTCTCACGTCGTCAAAACATCAATGTCAAGCCATTTCTCCTGAAGTTAAATTACTAATAACCCTGGGTTACTTGGCCACAGGCAAGATGCTACCGTGCAGTAGTGACGATTTGGGACTGTCAAGCTGTTCTATAGCTCATGTCAGAATGGTGATATCACAAACTATCAATGCCCTCTCAGATCCTCAACTAGTAGGCCAGTTCGTTGCCTTCCCGCAAGATGCCAGCCAGCTCCAACACAACCAAGCTAGGTTTAAAGCAATAGCTGGCTTCCCCAGTGTTGCTGGAGTCATTGGCACAACTTTTAGAAGCAGCTCAGTATTAAGTACAACATACAACAAGGAGTTCAATAATTTCCCTGGAGACCCAATTATTTTAATCAACACCCACGTGGTGTTCGATGCACACTGCAAGGTTCTCTATGTTGTGCCGAAGAGCGTGGATCAGGAGATACTGAGTGAGGTTGGCCTCAAACAGATTGAGGGGCTTCTTGCGCTTGCTGGATATCACTTGTTGGGGGACAGTGGATACCCCTGCAGACAATGGCTGCTCACATCTTACCTCCATCCACTGCCTGGCCCACAGTTCAACTACAAAAGGGCACTTAAGAAAACGAGATGTAATGAGGGCCATCAGCCAAATGAAGAGGAGATTTCCCATCCTGCAAGCATGATGGCTGAAGAGAATGGGCCAGTAGAGAGCCTGCCCCCAAGTGATCTTCACTACAGACTCTACTTTACTGATCTACATTTCAAGTATGCTGTAGAACAGACCCTGAATGTGTGGCTATCACAAGTACTGTACATGAGTTAGCTACAAACGATATGGAAATATGTGTTTATCGATCAGTTACAGTTCAACTGTCACAAGGGTGAGTTATTGTTGATTTTAAGAATAAATCATTAACCC
>XM_036948214.1
TAAAaccactgaagaagaagaagaacttgGGCAATATCTTCCCCTCTTCCCAATTTGCAAAGGATGGTGGAATATTGACTGGACTAGGATTCCCTTCACAATGTTAAAATTACAACTATTTAACACGTTTCTTACCGACCGATTATCAGCGGCCGCTGTGGAAATATCTGGGGCATTTAAAAAATCGTTAGCAGAGTACCAGGAAGAACTATCCCGTTCAAAGGAGGAGATTGAACGTCTACAAAGGATGCTAGATTTGGTTTTGGAACCCGAGATAAAGTTACATGGAACAGAGTCAGCAAGAGGGGAGCCCCAGTTTGGGCCAAGACCCAGATCCCACACAGATTAAAAATGAACAGGACCCTGAGCCAACACAGATTAAAGAGGAAGAAGACCTCAGGACCAGTCCGAAAGATCACACACAGATTAAAGAGGGGGGGGGAGTTCTGGGTCAGTCAGGGCGGAGACCAACTTCAAGGGCTGGAGTCTGATATAAGAGTTCATATTCAACCCTCCCTATATTAAAAGTGACTGATCAGGACCCATCTCAACCCTCACACCTTTACCAAAGTCAAAATGTAAAGAACAGACTTAGTGACTCTCTACCTACCAACACAACTGAGCAGATGGAAACAGAAGTGAATGAAGAGAACTACAGTGTCTCTCAGCCCTTCTCTGCAGTAAATTCAGAGTGCTCTGCTGATGAGACTAGAACAAGAGAAAATGCTTGGGTTGAGAAGGGAGAAACATCGTCAGGGTTAAAGCGGAGTTGTGAAGGCAAAAAATACTGTTGCCATGTCTGTGGCAAATGCTTCGCACACAATACTAATCTGAGAATCCATAAGACTGTTCACACAGGGGGGGGAAGCCATATAAGTGCAAAGACTGACAAATGCTACAGTGCAAAGGCAGACCTGGTAAGGCATATGAGGAATCGTCATTATTGGCCAGGGCATGTTCTAGGAGGACATTTTAATCAGGAAACCCATCATACTGTGACAAACAAAGATGCTTTATTAATGTGTGATGACAAGGAGTTGCTGGGAAGATACAGGCTTGATCAGGCAGGAATTACGTTTGTATTGGAGTTAGTCAGAGACTCTCTCACGTCGTCAAAACATCAATGTCAAGCCATTTCTCCTGAAGTTAAATTACTAATAACCCTGGGTTACTTGGCCACAGGCAAGATGCTACCGTGCAGTAGTGACGATTTGGGACTGTCAAGCTGTTCTATAGCTCATGTCAGAATGGTGATATCACAAACTATCAATGCCCTCTCAGATCCTCAACTAGTAGGCCAGTTCGTTGCCTTCCCGCAAGATGCCAGCCAGCTCCAACACAACCAAGCTAGGTTTAAAGCAATAGCTGGCTTCCCCAGTGTTGCTGGAGTCATTGGCACAACTTTTAGAAGCAGCTCAGTATTAAGTACAACATACAACAAGGAGTTCAATAATTTCCCTGGAGACCCAATTATTTTAATCAACACCCACGTGGTGTTCGATGCACACTGCAAGGTTCTCTATGTTGTGCCGAAGAGCGTGGATCAGGAGATACTGAGTGAGGTTGGCCTCAAACAGATTGAGGGGCTTCTTGCGCTTGCTGGATATCACTTGTTGGGGGACAGTGGATACCCCTGCAGACAATGGCTGCTCACATCTTACCTCCATCCACTGCCTGGCCCACAGTTCAACTACAAAAGGGCACTTAAGAAAACGAGATGTAATGAGGGCCATCAGCCAAATGAAGAGGAGATTTCCCATCCTGCAAGCATGATGGCTGAAGAGAATGGGCCAGTAGAGAGCCTGCCCCCAAGTGATCTTCACTACAGACTCTACTTTACTGATCTACATTTCAAGTATGCTGTAGAACAGACCCTGAATGTGTGGCTATCACAAGTACTGTACATGAGTTAGCTACAAACGATATGGAAATATGTGTTTATCGATCAGTTACAGTTCAACTGTCACAAGGGTGAGTTATTGTTGATTTTAAGAATAAATCATTAACCC

Function

NR:

description
putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570316.2 False 2029 mRNA 0.45 3 50400347 50402864
XM_021570317.2 False 2026 mRNA 0.45 3 50400347 50402864
XM_036948214.1 True 2009 mRNA 0.45 3 50400347 50402864

Neighbor

gene id symbol gene type direction distance location
LOC110494986 LOC106565131 coding upstream 13405 50382072 ~ 50386942 (+)
prkar2ab LOC106565134 coding upstream 98529 50290278 ~ 50301818 (+)
slc25a20 slc25a20 coding upstream 110798 50283097 ~ 50289549 (+)
LOC110494960 nckipsd coding upstream 119638 50263347 ~ 50280709 (+)
zgc:112334 LOC106565137 coding upstream 141339 50252807 ~ 50259008 (+)
sypl2a LOC106565128 coding downstream 5812 50408676 ~ 50422865 (+)
atxn7l2a LOC106565127 coding downstream 24281 50427145 ~ 50437612 (+)
LOC110494981 LOC106565126 coding downstream 35806 50438670 ~ 50445648 (+)
ldlrad2 LOC106565124 coding downstream 85860 50483057 ~ 50500086 (+)
LOC110494989 LOC106565121 coding downstream 107555 50510419 ~ 50543166 (+)
G1459570 NA non-coding upstream 8647 50391267 ~ 50391700 (+)
G1459568 NA non-coding upstream 19342 50380774 ~ 50381005 (+)
G1459562 NA non-coding upstream 31058 50369049 ~ 50369289 (+)
G1459518 NA non-coding upstream 41557 50297463 ~ 50358790 (+)
G1459510 LOC106565133 non-coding upstream 89985 50304131 ~ 50310362 (+)
G1459575 NA non-coding downstream 1512 50404376 ~ 50404630 (+)
G1459582 NA non-coding downstream 20951 50423815 ~ 50424018 (+)
G1459583 NA non-coding downstream 21521 50424385 ~ 50424786 (+)
G1459618 NA non-coding downstream 49916 50452780 ~ 50453450 (+)
LOC110494957 qrich1 other upstream 216651 50181045 ~ 50192699 (+)
G1458807 NA other upstream 961018 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1359991 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1679103 48693321 ~ 48814670 (+)
LOC110494013 LOC106565177 other upstream 1975942 48389082 ~ 48424478 (+)
G1459769 NA other downstream 373665 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 492076 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 677268 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3771150 54147039 ~ 54189617 (+)

Expression


Co-expression Network