sypl2a (LOC106565128)



Basic Information


Item Value
gene id sypl2a
gene name LOC106565128
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50408676 ~ 50422865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021570334.2
gcacaaaCAAAATGTACCATCGCCATtataccaaagaagaagaaaaacaagtTGCTTGTCACGTGTGCCTATACAGTTTAGAAAGTTTGACAGCAGTTTTACAACATCTGCTGCCTGCCAAAATTCAGTCGAATGTAAACCAGAGGTTCGTCCAAGTACAAGATTGTTGCTTTGGGAGAATATACGTTTTCTTCCAGTAAAGGGAACTTAACGAACAAACTTCTGAAAATCGAACATGGAATTTATTCAGAAACTGCTTTCGGGATTCAGACTTGACCTGGGACCGTTGAAAGAACCTCTGGGATTCATTCGGGTTCTAGAATGGGTGTTCACCATCTTTGCCTTTGCCACCACGGGGGGTTATTCTGGGACGACCCAAATCCTTGTGAATTGTGTGGGGGGGGAGCCCAAGACCGTAGGGGCAGGGTTCAGCTACCCCTTCAGGTTGTCTAGCTACGGCCCTTTCATGGTGCCCACGTGTAACGGCAGCGCTGCGAATGCGACTTACCTCCAGGGCGACTACTCCTCCTCAGCCGAGTTCTATGTCAGTGTCGGTGTCTTGGGCTTCCTGTACTGCACCGCCACCCTGGTGCTCTACCTGGGCTACCAGCATGTGTACCGCGAGGGCCGCGGACCCACCTTTGACCTGTTGGTGACTGCTGCCTTTGCCTTCCTGTGGCTGGTGTCCTCCTCTGCCTGGGGGAAGGGCCTGACTGATGTGAAGTGGGCCACCAACCCAGTACACCTGGTTGAGGCCTGCCAGCCCCAGTGCTCACCTGGAGAGTACCCGTCCATGGGAAAACTCAATGCCTCTGTGATTTTCGGGTTTCTGAACCTCATCCTGTGGGCAGGTAACTGTTGGTTCATCTTTAAGGAGACTCCATTCCACAAAGACCCCAATCCAGCAACCACCATGGAGGGTGGAGTCCCCAGCTCTTAATTGGCACACAGAAGCTCCACCTCTACAGTTCAAGCCAATCGCCAAGGTGCTTGGGACTGACAGTGTAACCCTATTAGGAAAGAAACTAAAATGTAGAGCAAAATTAAGCTTTTTAACCACCAACAACACAGGCCCCTTTTCAATGACGAGTGTTCGGCTCAAGCTTCAGGGATAGTAGTTAGTTGCCCATCTCTAACTTTCACCACAGTGAACCCAGGTTGTTGTTTATCTACTCTTCATAGAATTGGTCAGTTAATATGATTGATTTGCTAGCTGCACTCAACACTACCCCAATTTACAGAGTGATCACAactatttttttacttttttaaatGGAATTTCCCTTCCAAACTAAGTGCCTTTACTGTACATAAAATGTGTTCAGTTACTGTGAACGTGGCTTGAGTTGAACACTTTGATAGGGATCTGGGTATTTGTGATATCCAACATGTTTGATTTGGTCGGTTCCTCTAGAACAGGTGCTTTCGATCACATAGGCCTACCACAAAACAGGGCTCGCAGACAACCTACTGTAGCTGAACTGTTCCCTATATTTGATTCATATGAGGAAGTTCAGTAATGCTGGGTTGACATACAGTAATTGCCTGTCTGGAGGTCTCCTCCTTTCCCATGAATTTGTTAAAGGAGATGTCAAAGGTCATGTTGAAAGCCCCTGTTCTAGGTTGCCTTTCACGTCGAAATTTGGCACTTTCAAATAAGAAACAATTTAACTACTGGCCTTTCAGTAACTCCCTAATATTCCACTACTACTGCGTGTTTTGAAACGGACCTCATAGATACATTGATGTTTCTGTGTCTGAAAGCGTATTGCTTTGGTGCACTTAACTCGTTAGAGCTGTGTTAGCTACTTGATTGCAGTCGTTACTGATGTACAATGCGTTCCTCTCTTTGACGTGTGGTATGGCTTTTTTGTCATTATTTTGTTAACCGTATGAAAAGTGCCTTGGTAATTTACACAAAATATCAGTATCTGGTTAAGAGAGTACTTACTCTCAAAGAGTAACCAAGTTATTTTGGCTACAGTCAAGTTGATGTAACATGTTTTTAGTAACGGCTGTCTGTTTTAGTTATTCAACCAGTCAGTGCCTATAGTCCTCGACAGCGCTGGTTGGTGTATGTTTGCTCAACAACCTGCAGATAAGTGGTATTTTTGTGGATATCTTGGAAAATTTAGccaaactttttttaaatttgtGTATTGTGGAGGTGACCATTCTAACAACTACAACACTAAGTTCCCTATGTATTTGACTCTTCTCAAAAATGTTGTTTGAACGGGATAAGGCAACTTTAGAAAAGTcattatttatactttttttttttttacctacatTCATTGGTCAATACATTTAAAATTAAGCTAATTTATGGCTTCTGTGTgttaagaaaaatatattttatgcagCTTCTCTACCGGAGTCATTTTTATGCAAACACGGGTCCTAGATTTGTTGCTTTTTATTTGGCATCACTGGACAAGCTAGAATTAATCATGGCACCGCCAAGTAACAAGTGGCAACATGTAGGTGCCAAAATGTGGTGAATCCTGCTGTATTTTTTTGAATAATgcttatttttttcccctcaattaTTTACATTGGTCCTACATTTAATTTCGGCAATGATTGCGTTTGACGGTTATGTGGGGATGACGTACAAACTCTGTCCAGCTCTATGGGAAGTGAATGGAacttgatttttttttgttgctttgcaCTAAGTGTTGTAATTAATGTCATTGACTTATGAGTTGTGATTTGAGGGAAATGCAGACATTGTGCAATCCACACAGTGCCGTTCATACCGCCTTGGCCTCTAGTTATTTACAAAGGGAAGGTTTGAGTCAATATCAGTCATCAAAAGACACTGCTCTAGATCATTTGTGCCATTTTAATAGAAATAACCTAGCTTTTTAGGGTAGAAGTCAGACTTGTGGGTCTTCTATATTCTCTAATGGGATTTCTGAAATTTGACTCTGTATTTCTTTTGTATTTTGTTCCATGTTTGTACAAAATAAACATCTGTACATCCTCTGTATTGACAACACATTAAAGGATAAGAGAGCTGCAACAA

Function


NR:

description
synaptophysin-like protein 1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021570334.2 True 3034 mRNA 0.42 6 50408676 50422865
Loading

Neighbor


gene id symbol gene type direction distance location
LOC110494971 LOC106565129 coding upstream 5812 50400347 ~ 50402864 (+)
LOC110494986 LOC106565131 coding upstream 21734 50382072 ~ 50386942 (+)
prkar2ab LOC106565134 coding upstream 106858 50290278 ~ 50301818 (+)
slc25a20 slc25a20 coding upstream 119127 50283097 ~ 50289549 (+)
LOC110494960 nckipsd coding upstream 127967 50263347 ~ 50280709 (+)
atxn7l2a LOC106565127 coding downstream 4280 50427145 ~ 50437612 (+)
LOC110494981 LOC106565126 coding downstream 15805 50438670 ~ 50445648 (+)
ldlrad2 LOC106565124 coding downstream 65859 50483057 ~ 50500086 (+)
LOC110494989 LOC106565121 coding downstream 87554 50510419 ~ 50543166 (+)
LOC110494982 LOC106565312 coding downstream 235176 50658041 ~ 50664680 (+)
G1459575 NA non-coding upstream 4046 50404376 ~ 50404630 (+)
G1459570 NA non-coding upstream 16976 50391267 ~ 50391700 (+)
G1459568 NA non-coding upstream 27671 50380774 ~ 50381005 (+)
G1459562 NA non-coding upstream 39387 50369049 ~ 50369289 (+)
G1459518 NA non-coding upstream 49886 50297463 ~ 50358790 (+)
G1459582 NA non-coding downstream 950 50423815 ~ 50424018 (+)
G1459583 NA non-coding downstream 1520 50424385 ~ 50424786 (+)
G1459618 NA non-coding downstream 29915 50452780 ~ 50453450 (+)
G1459619 NA non-coding downstream 30618 50453483 ~ 50453775 (+)
LOC110494957 qrich1 other upstream 224980 50181045 ~ 50192699 (+)
G1458807 NA other upstream 969347 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1368320 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1687432 48693321 ~ 48814670 (+)
LOC110494013 LOC106565177 other upstream 1984271 48389082 ~ 48424478 (+)
G1459769 NA other downstream 353664 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 472075 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 657267 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3751149 54147039 ~ 54189617 (+)

Expression


sypl2a(LOC106565128) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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sypl2a(LOC106565128) Expression in each Bioproject

Bar chart with 21 bars.
sypl2a(LOC106565128) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network