kctd20 (LOC106565116)


Basic Information

Item Value
gene id kctd20
gene name LOC106565116
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50702162 ~ 50708829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568722.2
GGCCGtaagcaccaccctctgtagcgccttacggtcagataaCATTATTTGAGACATTTTATTattttctctctgtttatttgtTTCAATAATGTTTCTCTAAACCATACCAATAAATATGACTTTATGAAGTGAAAATAGTTCCCACCCCCCCGTCAAATTATTGGAGATATATGGTAGGGGTCAGTTAAGGAAAGGTAGATACACAGTAGCAATTCTGCGCGTTGAAACAAACGGATTGGGAATTCTCTTACGAGAGTCTCTGGATCTCTACACCGGGAGTAATTGGATTTGAGAGCACTGATCCGCTGTCACCGTATGGGCTGGGGCGCTTTCGGTAAACCCATATTCCTGCACTCCGCGCTCTGGCACTTGGCATCGGGTCCATCGTTCGCGTGACAAACCGGTTACAGAGAACAGCCGTTTTCACTCAGACGTTCTGACATTGACATGGCAGCACGTCCAGACTTCCAACGTGAGGGGAGGGGTGAGAAGaacctgtctcccctgtctcgcCTCCCCCATGAGCGGGTGACCCTGATGGTGGACGGGACTCACTTTGTGGTGGACCCTGCCCTGTTCACCGCGCACCCTGACACCATGCTGGGGAGGATGTTTGGTCCTGCCCGTCACTTCACCCGGCCAAACGCCAAGGGAGAGTATGAGATCGCTGAGGGAATCGGAGCCAGCATATTCAAAGTCGTCCTGgACTTTTACAAAGGGGGTATCCTGCAGTGTCCAGAGGGGGTGTCAGTGTCTGAGCTCAGAGAAGCGTGTGACTACCTCTGTATTAACTTTGACTACAGTACCGTCAGGTGCCGAGACCTCAGTGCATTGCTGCATGAGCTGTCCAACGATGGTGCAAAGCGTCAGTTTGATGTCTTCCTAGAGGAGCTAGTTGTCCCGGTGATGGTGTCCAGTGctcaggagggggagagggagtgtcACATCGTAGTTCTCACAGATGATGACATAGTGGATTGGGACCATGACAACCCTCCACCCATGGGAGAGGAGTACTCACAGATTCTGTACAGCACCAAGCTCTACCGCTTCTTCAAGTACATAGAGAACAGAGATGTGGCCAAAGCACTGTTaaaggagagaggactgaagaACATTCGCATCGGCATTGAGGGGTACCCTACCTGTAAGGAGAAGGTGAAGCGCCGTCCTGGtgggaggtcagaggtcatctaTAACTATGTGCAGCGGCCCTTCATCCAGCTGTCCtgggagaaggaggaagggaagagTCGACACGTGGACTTCCAGTGCGTCCGGAGCAAGAGTGTCCCCAACCTCATCACCTCTCTGGGGGAGCCAACACGACCCGCAGCCACACCCAACCCGCAGGTCGATGAGCTGGATAGGCTGATCAGCCCTGATCCCCGCCCCCAGTCTCAGGCCCCACCCCCACCCATCAATGACAGTTGAGGAGAGGGTAGAAGTTGACCTTGGGTATAGGTTTTTTCTTTGTTCCCCTattggttaaggtcagggtttgGCAAGGTTAAGGTTGCGCTGATactaaggcctagattcaatcagatcaagcattaACCAGCGATAGACGACACCCGCGTAGCTGATGTTTTGGAGTGACGGAGATGTAACTgggttggagctgtcaaatcagtGAGCAGCTGCTCTGGTGATCTCATGAAGCCACAACGTCCCACTTGTGTTAGAAGTTCAGACCGagaatgtgtaggctatatagaaataatgacgctcaaattcattaaacaaaataattaggatttctatcagcctaatcgaagtgtagattacatctcacattccagtatTCTAACTTGTAAACAGCGCTGCATGAGATTTCTGTTAATGCGaccagccaatggcaatgtccgctttaggtataaCGCCGGGAGAGCCTGttgatttgacagctctaatgcaGTTCCTCCTCTGACCTCAATGCTGGTATCAGCAAGCGCTGATCTGAAAGAATCTAGCCCTAGATCTGTGTTTTGGGGCAACTTCTACCCGAGGCCGTCATCAGTTACCACGTCAGCCTGTCTTCCACTCAGGATGTGTGAGTTTACAGACACACTCAAACAAACCTCCATGACCATACAGTCCAACCCATGTATGCATACAGAAACAGATGCGCATGAAacacagacatgtacacacacacatacacacatggattTGGACAAGGAGGATGTTTACAGTAGATAACTAGACCCTACCAGAGTATATCTAGTGTTTCCTCatttagaatgtgtgtgtgtgtgtgctcttttttttattttatgacgGATTACATTTTATATGCTTTGTACATTTATATAAAGGTTTCAGTTCATATTATTGTTTAAAGTATTTCCATCGTTTTTGTTCAAAGAATTGGTTCAAGTAATTGTTGCAGCTGCACGGGAAACCGAAATAAAATGATTGATGGCATAGCTA

Function

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD20-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568722.2 True 2439 mRNA 0.48 7 50702162 50708829

Neighbor

gene id symbol gene type direction distance location
LOC110494953 LOC106565294 coding upstream 4300 50665178 ~ 50697862 (+)
LOC110494982 LOC106565312 coding upstream 37482 50658041 ~ 50664680 (+)
LOC110494989 LOC106565121 coding upstream 158996 50510419 ~ 50543166 (+)
ldlrad2 LOC106565124 coding upstream 202076 50483057 ~ 50500086 (+)
LOC110494981 LOC106565126 coding upstream 256514 50438670 ~ 50445648 (+)
LOC110494040 cept1 coding downstream 20212 50729041 ~ 50748688 (+)
trnaa-ugc-133 NA coding downstream 31779 50740608 ~ 50740681 (+)
dram2b tmm77 coding downstream 45042 50753871 ~ 50758745 (+)
LOC118936400 NA coding downstream 107593 50816422 ~ 50819052 (+)
LOC110493204 NA coding downstream 116634 50825463 ~ 50829199 (+)
G1459693 LOC106565117 non-coding upstream 51915 50644899 ~ 50650247 (+)
G1459595 NA non-coding upstream 69792 50585636 ~ 50632370 (+)
G1459681 NA non-coding upstream 119671 50582195 ~ 50582491 (+)
G1459666 rl10a non-coding upstream 123493 50578017 ~ 50578669 (+)
G1459679 NA non-coding upstream 126018 50575856 ~ 50576144 (+)
G1459724 NA non-coding downstream 106 50708935 ~ 50711323 (+)
G1459756 NA non-coding downstream 52203 50761032 ~ 50761269 (+)
G1459764 NA non-coding downstream 62216 50771045 ~ 50771281 (+)
G1459771 NA non-coding downstream 68930 50777759 ~ 50778334 (+)
G1459792 NA non-coding downstream 101973 50810802 ~ 50811017 (+)
atxn7l2a LOC106565127 other upstream 266456 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 518466 50181045 ~ 50192699 (+)
G1458807 NA other upstream 1262833 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1661806 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1980918 48693321 ~ 48814670 (+)
G1459769 NA other downstream 67700 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 186111 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 371303 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3465185 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3547552 54256327 ~ 54264616 (+)

Expression


Co-expression Network