LOC118936400


Basic Information

Item Value
gene id LOC118936400
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50816422 ~ 50819052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037000.1
gatgttattttaatggacaaaaattgacatttttttttttttttttttttttttgaattttaccccttttttctccccaatttcgtagcaTAGATTAGAGCATAGATTAAGAAATTATACACTTTCTGGAGCACTAGTCATTGTCATGTCCCATCTCTTTGATCTGACAAAAATGTTCCCTTTATTCTTTTATGATACAGCATCTTTTCTTTGCCACTCTAACCTCTAAAGTCTGTTGGTCTCCTACCTTTTTGGGGGCACTTCCTTATCTAATCTGATGCACATGGCTTTTTATTCGGATAACTTGAAAATAAAGTGCTAGTATTGAACTCTTTTCCTACAGATACAGATATCCTACAAATATTAATCAAGAGCTTGATTGTCGCTGAGCCTACACACACTGTTGTGTGTTTGCATAAGAAGCCAATCAGATCCAACCATAACACCATCAGCCAACACTGAATCATCCACCTGTTCCAGAAGGGCCTGCGTCTCCATGACAACCTGTCCCGGTTGGGGGCCCTGGagtcatcagtgtgtgtgtgtaccccgtGTTCTTCTTGGACATGCGCACTGGGGCCGTGCGCTGGAGATTCCTCCTGCAGATCAGTGGGCTAACTTGGGTATCCTGATACAGGGTTTATAGTAGCACATACAGTtacctagcctgggtaccagtctgttttgctaacattccactccttgtactctgtgtcatacGCCAAAGATGTTTAGCATGACAGGAACTGCAAGGAGTGGAAAGATGGcaaaacagactggtacccaggctaaacATTATCAGGTATTTTAGAAATGATATGGTTACatggtaattacactgtaataacctATGAATTGATTATTTGGAATTGTCCTTTGCCCGTACTTTTCTTTTTCTGTAAGAAACTCAATATGTTATGAAAGGGACTAGTTGGTATCTAGAAACGTTAATAGCAACAAGATGCACCAACAGAACTGGAAAATGAGTGGTCGGTACTCACAGATTGGTTTGAAATCATATTGATGTGTTCTTCTACCTGGCCCTGCAGTGTCTGGAAGACCTCCACCATAGCCTCCAGGCCATGGGCACCAGGCTGTATGTGCTCCAGGGGCCCTACCAGGGGACAGTGATGCATCCGGTGGCCTAGTGGGGCACCACCCAGCTCAGCATGGACACTGAGATAGAGCCCCACAACACCCAGCTGGACCAGCAGCACTGCATCATGGCCAGAGAGCAGGGACTCAAAATACATGCCACCGTGGCACACACACTCTATTATGTCAAGAGGATATTGAAGGCTAACGGAAGGGATCACATCTGACATACAAGAAGTTTCTACACGTCCTGTCCAATCTGGGGGAGCCAGACAAACCTGCCAGAGAGATCACAGCTCAGGACTTCCAaggaccatgcctcaggactacctggcctgatgactccttgctgtccccagtccacctgg
>XR_005037001.1
gatgttattttaatggacaaaaattgacatttttttttttttttttttttttttgaattttaccccttttttctccccaatttcgtagcaTAGATTAGAGCATAGATTAAGAAATTATACACTTTCTGGAGCACTAGTCATTGTCATGTCCCATCTCTTTGATCTGACAAAAATGTTCCCTTTATTCTTTTATGATACAGCATCTTTTCTTTGCCACTCTAACCTCTAAAGTCTGTTGGTCTCCTACCTTTTTGGGGGCACTTCCTTATCTAATCTGATGCACATGGCTTTTTATTCGGATAACTTGAAAATAAAGTGCTAGTATTGAACTCTTTTCCTACAGATACAGATATCCTACAAATATTAATCAAGAGCTTGATTGTCGCTGAGCCTACACACACTGTTGTGTGTTTGCATAAGAAGCCAATCAGATCCAACCATAACACCATCAGCCAACACTGAATCATCCACCTGTTCCAGAAGGGCCTGCGTCTCCATGACAACCTGTCCCGGTTGGGGGCCCTGGagtcatcagtgtgtgtgtgtaccccgtGTTCTTCTTGGACATGCGCACTGGGGCCGTGCGCTGGAGATTCCTCCTGCAGATCAGTGGGCTAACTTGGGTATCCTGATACAGGGTTTATAGTAGCACATACAGTtacctagcctgggtaccagtctgttttgctaacattccactccttgtactctgtgtcatacGCCAAAGATGTTTAGCATGACAGGAACTGCAAGGAGTGGAAAGATGGcaaaacagactggtacccaggctaaacATTATCAGGTATTTTAGAAATGATATGGTTACatggtaattacactgtaataacctATGAATTGATTATTTGGAATTGTCCTTTGCCCGTACTTTTCTTTTTCTGTAAGAAACTCAATATGTTATGAAAGGGACTAGTTGGTATCTAGAAACGTTAATAGCAACAAGATGCACCAACAGAACTGGAAAATGAGTGGTCGGTACTCACAGATTGGTTTGAAATCATATTGATGTGTTCTTCTACCTGGCCCTGCAGTGTCTGGAAGACCTCCACCATAGCCTCCAGGCCATGGGCACCAGGCTGTATGTGCTCCAGGGGCCCTACCAGGGGACAGTGATGCATCCGGTGGCCTAGTGGGGCACCACCCAGCTCAGCATGGACACTGAGATAGAGCCCCACAACACCCAGCTGGACCAGCAGCACTGCATCATGGCCAGAGAGCAGGGACTCAAAATACATGCCACCGTGGCACACACACTCTATTATGTCAAGAGGTGGGTCACAGTGGATATTGAAGGCTAACGGAAGGGATCACATCTGACATACAAGAAGTTTCTACACGTCCTGTCCAATCTGGGGGAGCCAGACAAACCTGCCAGAGAGATCACAGCTCAGGACTTCCAaggaccatgcctcaggactacctggcctgatgactccttgctgtccccagtccacctgg

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0009881 photoreceptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037000.1 False 1463 mRNA 0.45 3 50816422 50819052
XR_005037001.1 True 1476 mRNA 0.45 3 50816422 50819052

Neighbor

gene id symbol gene type direction distance location
dram2b tmm77 coding upstream 57677 50753871 ~ 50758745 (+)
LOC110494040 cept1 coding upstream 67734 50729041 ~ 50748688 (+)
trnaa-ugc-133 NA coding upstream 75741 50740608 ~ 50740681 (+)
kctd20 LOC106565116 coding upstream 107593 50702162 ~ 50708829 (+)
LOC110494953 LOC106565294 coding upstream 118560 50665178 ~ 50697862 (+)
LOC110493204 NA coding downstream 6411 50825463 ~ 50829199 (+)
LOC110494043 LOC106565114 coding downstream 17963 50837015 ~ 50840404 (+)
rbbp5 LOC106565113 coding downstream 33555 50852607 ~ 50861098 (+)
LOC110494047 btg2 coding downstream 75851 50894903 ~ 50897444 (+)
apobec2a LOC100196684 coding downstream 233630 51052682 ~ 51062761 (+)
G1459797 NA non-coding upstream 540 50815657 ~ 50815882 (+)
G1459795 NA non-coding upstream 1384 50814713 ~ 50815038 (+)
G1459793 NA non-coding upstream 3696 50812504 ~ 50812726 (+)
G1459792 NA non-coding upstream 5405 50810802 ~ 50811017 (+)
G1459771 NA non-coding upstream 38088 50777759 ~ 50778334 (+)
G1459815 LOC106565111 non-coding downstream 43616 50862668 ~ 50866685 (+)
G1459816 LOC106565111 non-coding downstream 47834 50866886 ~ 50867160 (+)
G1460176 NA non-coding downstream 66495 50885547 ~ 50885768 (+)
G1460177 NA non-coding downstream 67173 50886225 ~ 50886556 (+)
G1460190 NA non-coding downstream 87691 50906743 ~ 50906946 (+)
G1459769 NA other upstream 39350 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 380716 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 632726 50181045 ~ 50192699 (+)
G1458807 NA other upstream 1377093 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1776066 48866589 ~ 49040356 (+)
G1460249 LOC106565103 other downstream 261080 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3354962 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3437329 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 3652653 54471705 ~ 54474472 (+)

Expression


Co-expression Network