LOC110493204



Basic Information


Item Value
gene id LOC110493204
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50825463 ~ 50829199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036950045.1
tatgcatatcctggcgtCAGGGCCTGAtctacaggcagtttactttgggcacgtcattcagacaggaagtggagaaaaaaggggcctatcCCTAAGAAGATTTATTAATGAAGGGGCTAAGCCTCGGCATAcccacaacttgtttattcatcaaaacccagccctttcgtGCCACCACCAGCTACTGCATCCATAATTCCTGTTGTGAAAATGGCTCAAATATTTTTGACACCCCCCAAACCTATAACTCTACCGCCAGTGCTAAGATTTACCATTGTGTTGGGTTTGTTAAAGTAAAGCACTTAGTGTCAAAAATTACACGCTTATGGAGTGTATACCTAGATCAAGCCAGATATGTGGGCTCTACAGGTTGCCATACATCTCGGGTAGTCAACATGTAAGCACTTGAGATTTTCTGAGCAGGTACTAAGAAGTCACACAGTAAGTGCAGTTTTCAGTTGCCACCATAAAACCTTCCATGTTCCCCACTCAGCACCAACAGGAATGGGATGAAGAAGGATAGGGTACACAGACAGTTTAATGTTATTTTCTATGGGTCATATGCTGCAGGGATTCCTTCTGTTCTGATTGTGGTATGAGACCTTCTGGTCCCTTTGGGAGCTTCAGTCAGCAGCACACAGAGAGCATAATTtctctccactgtcctctcctgcgaACACAATGCGTGCCAGTTAATTAGACAGCCTCTACTATAATCAACCAATATTTTGATCTAAGTAGGACAATTTAATCCAAAAGACTGTTTGCCATAATAGAGAATTAAAACCTCTCTCCCTGTGCTAATTGCATGCTAATGATGGCATTAATAGATAGTGTTGATTGGGCACAGCTTCTGTTGTTATTTCCGTGTGTGCGTCATTGAGTCACTGATGGAACAGATGCCTCTCTCTGCTGCCAGATTGCTTGTGTTGGGTGAACTCGCCCGCCAAGGAAGGAATGGGTGTGTCCATATGTTCTAAAGAGATAGTTGACTGAGAAATAACCTGAGATTGACCCTGCCGGTgccttttgtgtgtgtgcttcagtGGGAGCACTCTGTTTGTTCTGTTGGTGCTCTAATCTACAATAAATGCCAGCTGTTCAAGCTTCAAAGCAGTGATCTCTGTGTTTtgttgtatgtgtgcatgtgtgctatATATTTGAGGCCCTGTGACCCATTCAAACGCAGATTAACTATCTGAGCCAGTCAGGCCATCAAAAGCACAGCAAAACCCTACTCTCTgctgttctgctgctgtttgATGTGATCTAGGAGCAGTGttctggggagacatacaggctTTTCTCCTGTGATGTGAACAGGTGCCACTGTTCTCTGTACAGTATGAAAGTGAATAGGGATAAGAGCCTTGAAGACTGACTCGAAGCCCAGTTTAGACCTACTGGCTGTTGTTAGTGGCTGGAAATGAAGCTTTGGAACACGGAGAGGGCTTGAACATGAACATGAAAGGGTTTGTCGTCCAGGGAGAGGGGGAATAAACTAGACATTTGTGATAGGCTGGaggaaaacaaaaataaacattgtgACACTGCAGTCGTGTCCTCCAGGCTGTGCTAAAGACAGATGTTTGAAAAAAGGAAAAGGGAGCAGAATAGAAACAGATCCGATAACACTCACGGCTGCCCAACATTATTTATATTTGTACTGGGGTAACATTGTATGGATGTTTCCCTTGTATTGTAGGAAGTGTCCTTCCCTGTTGTATGGTGGTAACGTTATAATTATGTTTCCCTTGCAGGACGTGCCCTTCCCCGGCAGCTGAGGAGTACAGTGAAGGAACAGACAGGCTTAACCTGGATCAACGCCATCATGACTCAGCTGAGGCAGGAGGGCTGGATCCACCACTTGGCCAGACACGCTGTGGCCTGCTTTCTGACCAGAGGAGACCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTGTTTGAGGGGCACCTGTTGGATGCAGACTACAGTTTAAATGCAGGGAACTGGATGTGGCTGTCTGCCAGTGCCTTCTTCAACCAGTACCACACGTATCTTCTGCCCTGTACTCTTCGGGTGACGCACAGACGAAGAATACCTCAGGAAGTATTTCCCCTCTAAGTCTATGAGCCCTAGATGGCCATAGAGGAAGTGTTGCTGCAGGCTTGCTGCATCATTGGTACGATGCTGTTTCTGTAATGTTTTTCTTACCATAACTATTGTTAAAGCTACTAGTCCCCTTTTTCAGACTGCTGCTTGTAGTGGGCATTTCCATCTTAAAGGACCCGTGAGCACCAAGGTGAAATTCATAGGAACATGTCAAATTGAGTTTCAAATTAAAGCAACGAGTCAAGATTTTTGAGAAATTAACaaatacatacatttttcaaccattttccatcctaaaaatgtatttgtactgtgatgtccaaacttgtgaaatacaaacttctatgattggttcagattttgtcTGGTCTGGACCAACAAAACGTGCTCTTGTTTTGGGATGGAGCTCATTAAAATaaggatattgcatatttctacctttgtATACCTGTTTGTGATACATTACAATAATGATATTTTgggatttggtattttattagggtccccattagctgttgcaaaagcagcagctactcttcctggggtccaca

Function


NR:

description
PREDICTED: cryptochrome-1-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0009881 photoreceptor activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036950045.1 True 2643 mRNA 0.44 4 50825463 50829199

Neighbor


gene id symbol gene type direction distance location
LOC118936400 NA coding upstream 6411 50816422 ~ 50819052 (+)
dram2b tmm77 coding upstream 66718 50753871 ~ 50758745 (+)
LOC110494040 cept1 coding upstream 76775 50729041 ~ 50748688 (+)
trnaa-ugc-133 NA coding upstream 84782 50740608 ~ 50740681 (+)
kctd20 LOC106565116 coding upstream 116634 50702162 ~ 50708829 (+)
LOC110494043 LOC106565114 coding downstream 7816 50837015 ~ 50840404 (+)
rbbp5 LOC106565113 coding downstream 23408 50852607 ~ 50861098 (+)
LOC110494047 btg2 coding downstream 65704 50894903 ~ 50897444 (+)
apobec2a LOC100196684 coding downstream 223483 51052682 ~ 51062761 (+)
csf1 csf1 coding downstream 772234 51601433 ~ 51640412 (+)
G1459797 NA non-coding upstream 9581 50815657 ~ 50815882 (+)
G1459795 NA non-coding upstream 10425 50814713 ~ 50815038 (+)
G1459793 NA non-coding upstream 12737 50812504 ~ 50812726 (+)
G1459792 NA non-coding upstream 14446 50810802 ~ 50811017 (+)
G1459771 NA non-coding upstream 47129 50777759 ~ 50778334 (+)
G1459815 LOC106565111 non-coding downstream 33469 50862668 ~ 50866685 (+)
G1459816 LOC106565111 non-coding downstream 37687 50866886 ~ 50867160 (+)
G1460176 NA non-coding downstream 56348 50885547 ~ 50885768 (+)
G1460177 NA non-coding downstream 57026 50886225 ~ 50886556 (+)
G1460190 NA non-coding downstream 77544 50906743 ~ 50906946 (+)
G1459769 NA other upstream 48391 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 389757 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 641767 50181045 ~ 50192699 (+)
G1458807 NA other upstream 1386134 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1785107 48866589 ~ 49040356 (+)
G1460249 LOC106565103 other downstream 250933 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3344815 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3427182 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 3642506 54471705 ~ 54474472 (+)

Expression



Co-expression Network