LOC110494043 (LOC106565114)


Basic Information

Item Value
gene id LOC110494043
gene name LOC106565114
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50837015 ~ 50840404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568729.2
GCACTCATGAATAAAATAGAGAGAGCTGCAGCCTGTTTGAGGTGACGCAAGATCCGGAGAAAACGAGTGCAGTAGTTGAGGCGCCACGTCGGCAGAACCAACAAGATACATCCTATATTTTTTTAAGGAAAGTTTGAAACCGCGAAAGTACGATTTTACGTGCGTTAaaatacaggacaacacactCTTAAAGTATAGCTTTGAATAGAGGAGTTTGAACAAAAGTATAAAGGCACAGGCTGAAAATTGCAATAATATTTTCAGGAAACAAACGAGCGCACCAAATATTCGTCTCAGGTGCGTAGCAGTCCCTTCTACAAGCGGACATCAGAAATTACTGGAAACATGGTGAAGAACGTGAACGCCACCCCAGAGCCCCGGCCTGAAGGTTGTCTCGTGGAAGAAGAACCCGAGCTTACTGAAAGCGAGCCCACAGCAGatgAGGGGAAGGATGCAGGTAAGGAGCACCCCGTAGCCCAGCCGGGCATGATCTGGCGGGTCGGGGGTGGCCTGTTCCGTGCCAGTAAAACTGTGGTGGGCGCCACTGTAGGAGGAGTTGCCTGGCTCGGTGGGAAGAGTCTGGAGTACACTAAATCAGCAGTTACTTCAGTCCCCTCGATGAGCGTCAGCCTGGTGAAAGGGGTCGCTGGGGGCGTGTCATCGGTCGCCGGGGGCGTGTCATCAGTGGGTTCCACGGTAGCTGGCAAAGTTCCGTTCAGAGCCAAGACCAAGGACAAGGCAGAGTGAGGAGgagatgatgatgacgatgatggaCACGCAACACGATGCATCGCCCCACCGACTGAGCCATAAGAGGAAGTGATGAGTTGAAGCTAGTCGCCATGTTTTCAAAGTGGattgatttctttttttttttcttttttcgttTGTACATCATTCACTAAGTTGTACCTGGGGAAACATGTTCAGTAGTGCCTTCTGTAGCCTCCCCCTTCTTTGCCTGTCCCCCCCAAACACTTTCACTGAGCAGTGTGTACAGGGGGTCTTCATCCAAACCTACATGGTCCCCTGAAGCCTTAAGACAATGTAAAGCAGTTatataaggagggagagagaaacaggcatgCTAGGTTGGGTTCTTCTCTTCCACCATTTAAAGCCTGGTTTGTGGTTTATAATGTGCTGGAATTTTTGTATGAGCTTTTTTTGTGACCGCAAACTCAAACACAGAACATTAACTTTAAATGCTACAGTGAACCGTGTGAAGATAGCTTTTTGAGTCTTCTGAAAAGAGTTTGATAGCATTTCCAAAATAAGTTGAAGGTGATGTGGTTCTGAGAGCCAATAGCCCTGTTTAGGTtgatgttgtggcaaaatgataTGATCACTTTAATCATGGTTATTCAGTAGATCCATATATGAAATGGAGACGTCATACATTTTACagaaaataaaatctatttattgATGGACTAGTTTCTCTACTGTCTGTCTTTGGTCCTTTTTATAACGTTTCTATGGAAACTCAACATTTCAATGCAACAGTTTGGGTTTGTTTCTGTATTCTGCCATGACTTGGCTGTTGCTGGTAGAGAATGCTGATATGACTGTCTGGCATGCTTGTACTTTCCAACATAATAATAAAGTCTTGTGGGAAGTTTGACA

Function

NR:

description
transmembrane protein 263-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568729.2 True 1626 mRNA 0.45 3 50837015 50840404

Neighbor

gene id symbol gene type direction distance location
LOC110493204 NA coding upstream 7816 50825463 ~ 50829199 (+)
LOC118936400 NA coding upstream 17963 50816422 ~ 50819052 (+)
dram2b tmm77 coding upstream 78270 50753871 ~ 50758745 (+)
LOC110494040 cept1 coding upstream 88327 50729041 ~ 50748688 (+)
trnaa-ugc-133 NA coding upstream 96334 50740608 ~ 50740681 (+)
rbbp5 LOC106565113 coding downstream 12203 50852607 ~ 50861098 (+)
LOC110494047 btg2 coding downstream 54499 50894903 ~ 50897444 (+)
apobec2a LOC100196684 coding downstream 212278 51052682 ~ 51062761 (+)
csf1 csf1 coding downstream 761029 51601433 ~ 51640412 (+)
LOC110494059 nfasc coding downstream 1126635 51967039 ~ 52121978 (+)
G1459797 NA non-coding upstream 21133 50815657 ~ 50815882 (+)
G1459795 NA non-coding upstream 21977 50814713 ~ 50815038 (+)
G1459793 NA non-coding upstream 24289 50812504 ~ 50812726 (+)
G1459792 NA non-coding upstream 25998 50810802 ~ 50811017 (+)
G1459771 NA non-coding upstream 58681 50777759 ~ 50778334 (+)
G1459815 LOC106565111 non-coding downstream 22264 50862668 ~ 50866685 (+)
G1459816 LOC106565111 non-coding downstream 26482 50866886 ~ 50867160 (+)
G1460176 NA non-coding downstream 45143 50885547 ~ 50885768 (+)
G1460177 NA non-coding downstream 45821 50886225 ~ 50886556 (+)
G1460190 NA non-coding downstream 66339 50906743 ~ 50906946 (+)
G1459769 NA other upstream 59943 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 401309 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 653319 50181045 ~ 50192699 (+)
G1458807 NA other upstream 1397686 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1796659 48866589 ~ 49040356 (+)
G1460249 LOC106565103 other downstream 239728 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3333610 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3415977 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 3631301 54471705 ~ 54474472 (+)

Expression


Co-expression Network