rbbp5 (LOC106565113)


Basic Information

Item Value
gene id rbbp5
gene name LOC106565113
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50852607 ~ 50861098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568727.2
TGACTGGTTGCTGCCGGGCTATTGACTTTCTAGTATTTAGAGGTGGACTTTTGGTGGAGTAGATATGATTTCTTATGTAGTTTTCGTGCCATTTATGTTTTGATTGTAggttgaaaatatgtattttatatgGAATAACTTAATTTCTATAACCTGAAACCCCGCCCTGTTTTTCCGTGTATTTTGTGATTGGTTATATTGGGAAAGACCCGGATGTTAACGGGTGGTTGGATTTTAGAGTCCTGTGTGTAATGCAGTTGCCTGATAGAACATGGACACAAGAGCAACTGTGTCGGCCTGGATGGAGGATGTTATGAATTAAATAACGTACACGTTCATATATTCAGATGTTGAATAAGTATCTGAAATCATGCGTACAAAAATCAAAAACATAATTGCAAATAGTTTACTTTGAACATACGATAAAATGAATTAAATCcgtatagatttttatttgggcAGTTTCAGCGTCACTTTGTTTGGGGTCCTTCGTTAGCTAGGCGCCAGTCACTCTCTTGTTAGCAACAGAGCTACATAGCTAAACGTCTGTGTTTTGGATACATCGACTTGAATACTGTTTATTTTTGATATTCGTGGTCTCAAAATTGGTCAGCGATGAATTTAGAGTTGCTCGAGTCGTTCGGGCAGAACTATCCAGAGGAGGCCGATGGCACTCTGGACTGTATCAGTATGGCTCTCACATGCACCTTTAACCGCTGGGGCACGCTTCTGGCGGTGGGCTGCAACGACGGACGCATCGTCATCTGGGACTTCCTGACACGGGGCATCGCCAAGATCATCAGCGCTCACATTCATCCAGTCTGCTCACTGTGTTGGAGTCGAGACGGTCACAAGCTGGTGAGTGCGTCTACAGATAACATAGTGTCGCTATGGGACGTCCTGACTGGAGACTGTGACCAGAGGTTCCGCTTCCCCTCGCCCATCCTCAAACTGCAGTACCACCCCAGAGACCTTGACAAAGTCCTGGTGTGTCCTATGAAGTCCGCTCCGGTGCTGCTGACCCTGTCTGACTCTAAACACGTGGTTCTGCCCGTGGATGACGACTCTGACCTGAATGTGGTGGCGGCCTTCGACCGGCGGGGGGAGTACATCTACACCGGCAACGCCAAAGGAAAGATTCTGGTGCTGAACACGGACACGCAGGATCTGGTGGCATCGTTTCGGGTAACAACAGGGACCAGTAATACCACAGCCATCAAGTCCATAGAGTTTGCGCGCAAGGGCAGTTGTTTCCTCATCAACACAGCAGACAGAATCATCAGGGTGTATGACGGGAGGGAGATTCTCACCTGTGGGAGAGACGGGGAGCCAGAGCCCATGCAGAAACTACAGGACCTTGTCAACAGgACTCCCTGGAAGCGGTGTTGTTTCTCTGGGGATGGGGAGTACATTGTGGCTGGTTCAGCCCGACAGCATGCTCTGTACATCTGGGAGAAGAGCATTGGCAACTTGGTGAAGATCCTCCATGGAACCAGAGGAGAACTACTGCTGGACGTGGCTTGGCACCCTGTGCGGCCAATCATCGCCTCCATATCCAGCGGAGTGGTGTCCATCTGGGCTCAGAACCAAGTGGAAAACTGGAGTGCGTTCGCCCCAGACTTCAAGGAGCTGGATGAGAACGTGGAGTACGAGGAGAGAGAGTCTGAGTTTGACATAGAGGATGAGGATAAGAGTGAACCTGAACAAACAGgtGCTGATGCTGCAGAGGATGAGGAGGTGGATGTGACCTCTGTTGACCCCATCGTTGCATTCTGCAGCAGTGATGAGGAGCTGGAGGACTTCAAGGCCCTGCTCTACCTGCCCATCGCTCCAGAGGTAGAAGACCCTGAGGAGAATCCATTTGGTCCCCCTCCAGATGCAGCCGGCCAGACCACCCCCGTAGAAGATGGTTCAGCCCACACAGGGAGCGGGGACAAGAAGCGCCAGCCGTCCTCAGAGGGAGTTCCGCCCAAAAAGAAGGCTCGTACCACCACCATCGAACTACAGGGGGTGCCTAGTGATGAGGTGCACCCCTTACTGGGGGTAAAGGGAGACAGCAAGTCCAAGAAGAAGACGGCAGGGCGGCCAAAAGGCTCCAAAGGTAAAGAGAAAGACTTTCCCTTCAGGCCCAAACCCTACAGGGGGGACAGGGTCTACCCTGACGGAGCGGTAgcgggaggaggagcaggaggaggaggaggaggagggatgaagggCAGAGCGGAGGGGGGCCTGACTGCAGCAGGGAGCCTGGTTTCACAGTCCTACAAGCAGCATGATATCGGGGGACTGGACTGAGCCAGCACCATAATCATCATCGCCCCCTGTGGTTCTGGAAGGGGAAGGACAGGCACCTAAATTCGGCCTGTTTTTACACTCTCCTAAAATCAAGACTCTTTGTGATATCACTCAAGACTGTCATTATGGTatcaccccccaccaccaccacaaccccaaaAGACTCATTATGACATCACAGCCTTCTATTGCTCAGGCTGTGACTTTCCCTAccggctgtctctctctgtcctctctctgtgctgGCTGCTATGGTTACCTGGATTATCTCCCTCCTGTCAAAGACTGATGTATGTGACCTGATGATGTCACAAGTTTTAGATGAGAGTTCTGACTAGGAACTCCTGCAACATAGCAGATTCACACTTTctcattttcatgttttttttttgttggatGAGTAACAGAAACAAACCAAGAGAAGAGGGAAGCAACAGACTGCAATAGTATAGGGtcacctctcttctcccctctgtcTTTTTTTTCTGTAGAATGACTGatgtacagatacagtacaggaGTTATTACATGGAATGTGTCCCAACTGGTCTCCTTTTAACTCTGTTTCTGGACATGTCTTTTTGTGTTTCTTTTTATACATGTTATTAAACCATTTAGATTGTTTTTGA
>XM_021568728.2
GCCGGGCTATTGACTTTCTAGTATTTAGAGGTGGACTTTTGGTGGAGTAGATATGATTTCTTATGTAGTTTTCGTGCCATTTATGTTTTGATTGTAggttgaaaatatgtattttatatgGAATAACTTAATTTCTATAACCTGAAACCCCGCCCTGTTTTTCCGTGTATTTTGTGATTGGTTATATTGGGAAAGACCCGGATGTTAACGGGTGGTTGGATTTTAGAGTCCTGTGTGTAATGCAGTTGCCTGATAGAACATGGACACAAGAGCAACTGTGTCGGCCTGGATGGAGGATGTTATGAATTAAATAACGTACACGTTCATATATTCAGATGTTGAATAAGTATCTGAAATCATGCGTACAAAAATCAAAAACATAATTGCAAATAGTTTACTTTGAACATACGATAAAATGAATTAAATCcgtatagatttttatttgggcAGTTTCAGCGTCACTTTGTTTGGGGTCCTTCGTTAGCTAGGCGCCAGTCACTCTCTTGTTAGCAACAGAGCTACATAGCTAAACGTCTGTGTTTTGGATACATCGACTTGAATACTGTTTATTTTTGATATTCGTGGTCTCAAAATTGGTCAGCGATGAATTTAGAGTTGCTCGAGTCGTTCGGGCAGAACTATCCAGAGGAGGCCGATGGCACTCTGGACTGTATCAGTATGGCTCTCACATGCACCTTTAACCGCTGGGGCACGCTTCTGGCGGTGGGCTGCAACGACGGACGCATCGTCATCTGGGACTTCCTGACACGGGGCATCGCCAAGATCATCAGCGCTCACATTCATCCAGTCTGCTCACTGTGTTGGAGTCGAGACGGTCACAAGCTGGTGAGTGCGTCTACAGATAACATAGTGTCGCTATGGGACGTCCTGACTGGAGACTGTGACCAGAGGTTCCGCTTCCCCTCGCCCATCCTCAAACTGCAGTACCACCCCAGAGACCTTGACAAAGTCCTGGTGTGTCCTATGAAGTCCGCTCCGGTGCTGCTGACCCTGTCTGACTCTAAACACGTGGTTCTGCCCGTGGATGACGACTCTGACCTGAATGTGGTGGCGGCCTTCGACCGGCGGGGGGAGTACATCTACACCGGCAACGCCAAAGGAAAGATTCTGGTGCTGAACACGGACACGCAGGATCTGGTGGCATCGTTTCGGGTAACAACAGGGACCAGTAATACCACAGCCATCAAGTCCATAGAGTTTGCGCGCAAGGGCAGTTGTTTCCTCATCAACACAGCAGACAGAATCATCAGGGTGTATGACGGGAGGGAGATTCTCACCTGTGGGAGAGACGGGGAGCCAGAGCCCATGCAGAAACTACAGGACCTTGTCAACAGgACTCCCTGGAAGCGGTGTTGTTTCTCTGGGGATGGGGAGTACATTGTGGCTGGTTCAGCCCGACAGCATGCTCTGTACATCTGGGAGAAGAGCATTGGCAACTTGGTGAAGATCCTCCATGGAACCAGAGGAGAACTACTGCTGGACGTGGCTTGGCACCCTGTGCGGCCAATCATCGCCTCCATATCCAGCGGAGTGGTGTCCATCTGGGCTCAGAACCAAGTGGAAAACTGGAGTGCGTTCGCCCCAGACTTCAAGGAGCTGGATGAGAACGTGGAGTACGAGGAGAGAGAGTCTGAGTTTGACATAGAGGATGAGGATAAGAGTGAACCTGAACAAACAGgtGCTGATGCTGCAGAGGATGAGGAGGTGGATGTGACCTCTGTTGACCCCATCGTTGCATTCTGCAGCAGTGATGAGGAGCTGGAGGACTTCAAGGCCCTGCTCTACCTGCCCATCGCTCCAGAGGTAGAAGACCCTGAGGAGAATCCATTTGGTCCCCCTCCAGATGCAGCCGGCCAGACCACCCCCGTAGAAGATGGTTCAGCCCACACAGGGAGCGGGGACAAGAAGCGCCAGCCGTCCTCAGAGGGAGTTCCGCCCAAAAAGAAGGCTCGTACCACCACCATCGAACTACAGGGGGTGCCTAGTGATGAGGTGCACCCCTTACTGGGGGTAAAGGGAGACAGCAAGTCCAAGAAGAAGACGGCAGGGCGGCCAAAAGGCTCCAAAGGGAGCCTGGTTTCACAGTCCTACAAGCAGCATGATATCGGGGGACTGGACTGAGCCAGCACCATAATCATCATCGCCCCCTGTGGTTCTGGAAGGGGAAGGACAGGCACCTAAATTCGGCCTGTTTTTACACTCTCCTAAAATCAAGACTCTTTGTGATATCACTCAAGACTGTCATTATGGTatcaccccccaccaccaccacaaccccaaaAGACTCATTATGACATCACAGCCTTCTATTGCTCAGGCTGTGACTTTCCCTAccggctgtctctctctgtcctctctctgtgctgGCTGCTATGGTTACCTGGATTATCTCCCTCCTGTCAAAGACTGATGTATGTGACCTGATGATGTCACAAGTTTTAGATGAGAGTTCTGACTAGGAACTCCTGCAACATAGCAGATTCACACTTTctcattttcatgttttttttttgttggatGAGTAACAGAAACAAACCAAGAGAAGAGGGAAGCAACAGACTGCAATAGTATAGGGtcacctctcttctcccctctgtcTTTTTTTTCTGTAGAATGACTGatgtacagatacagtacaggaGTTATTACATGGAATGTGTCCCAACTGGTCTCCTTTTAACTCTGTTTCTGGACATGTCTTTTTGTGTTTCTTTTTATACATGTTATTAAACCATTTAGATTGTTTTTGA

Function

NR:

description
PREDICTED: retinoblastoma-binding protein 5 isoform X1

GO: NA

KEGG:

id description
K14961 RBBP5, SWD1, CPS50; COMPASS component SWD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568727.2 False 2927 mRNA 0.49 14 50852607 50861098
XM_021568728.2 True 2771 mRNA 0.49 14 50852619 50861098

Neighbor

gene id symbol gene type direction distance location
LOC110494043 LOC106565114 coding upstream 12203 50837015 ~ 50840404 (+)
LOC110493204 NA coding upstream 23408 50825463 ~ 50829199 (+)
LOC118936400 NA coding upstream 33555 50816422 ~ 50819052 (+)
dram2b tmm77 coding upstream 93862 50753871 ~ 50758745 (+)
LOC110494040 cept1 coding upstream 103919 50729041 ~ 50748688 (+)
LOC110494047 btg2 coding downstream 33805 50894903 ~ 50897444 (+)
apobec2a LOC100196684 coding downstream 191584 51052682 ~ 51062761 (+)
csf1 csf1 coding downstream 740335 51601433 ~ 51640412 (+)
LOC110494059 nfasc coding downstream 1105941 51967039 ~ 52121978 (+)
LOC110494060 LOC106565094 coding downstream 1329501 52190599 ~ 52273991 (+)
G1459797 NA non-coding upstream 36725 50815657 ~ 50815882 (+)
G1459795 NA non-coding upstream 37569 50814713 ~ 50815038 (+)
G1459793 NA non-coding upstream 39881 50812504 ~ 50812726 (+)
G1459792 NA non-coding upstream 41590 50810802 ~ 50811017 (+)
G1459771 NA non-coding upstream 74273 50777759 ~ 50778334 (+)
G1459815 LOC106565111 non-coding downstream 1570 50862668 ~ 50866685 (+)
G1459816 LOC106565111 non-coding downstream 5788 50866886 ~ 50867160 (+)
G1460176 NA non-coding downstream 24449 50885547 ~ 50885768 (+)
G1460177 NA non-coding downstream 25127 50886225 ~ 50886556 (+)
G1460190 NA non-coding downstream 45645 50906743 ~ 50906946 (+)
G1459769 NA other upstream 75535 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 416901 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 668911 50181045 ~ 50192699 (+)
G1458807 NA other upstream 1413278 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1812251 48866589 ~ 49040356 (+)
G1460249 LOC106565103 other downstream 219034 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3312916 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3395283 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 3610607 54471705 ~ 54474472 (+)

Expression


Co-expression Network