Item | Value |
---|---|
gene id | LOC110493208 |
gene name | LOC106565100 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048581.1 |
NCBI id | CM023235.2 |
chromosome length | 95212422 |
location | 51704037 ~ 51872774 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: pleckstrin homology domain-containing family A member 6-like isoform X3 |
id | description |
---|---|
K23797 | PLEKHA4_5_6_7; pleckstrin homology domain-containing family A member 4/5/6/7 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036950084.1 | False | 8205 | mRNA | 0.49 | 22 | 51704037 | 51739657 |
XM_036950080.1 | False | 7186 | mRNA | 0.49 | 23 | 51704037 | 51764247 |
XM_036950082.1 | False | 7182 | mRNA | 0.49 | 23 | 51704037 | 51764247 |
XM_036950083.1 | False | 7150 | mRNA | 0.49 | 23 | 51704037 | 51764247 |
XM_036950076.1 | False | 7206 | mRNA | 0.49 | 25 | 51704037 | 51787741 |
XM_036950068.1 | False | 7261 | mRNA | 0.49 | 26 | 51704037 | 51787742 |
XM_036950077.1 | False | 7186 | mRNA | 0.49 | 26 | 51704037 | 51787742 |
XM_036950067.1 | False | 7283 | mRNA | 0.49 | 27 | 51704037 | 51787743 |
XM_036950065.1 | False | 7344 | mRNA | 0.49 | 27 | 51704037 | 51787744 |
XM_036950078.1 | False | 6936 | mRNA | 0.49 | 24 | 51704037 | 51787744 |
XM_036950075.1 | False | 7148 | mRNA | 0.49 | 28 | 51704037 | 51812587 |
XM_036950073.1 | False | 7275 | mRNA | 0.49 | 28 | 51704037 | 51812718 |
XM_036950066.1 | False | 7187 | mRNA | 0.49 | 27 | 51704037 | 51812723 |
XM_036950074.1 | False | 7146 | mRNA | 0.49 | 28 | 51704037 | 51824683 |
XM_036950071.1 | False | 7276 | mRNA | 0.49 | 29 | 51704037 | 51825461 |
XM_036950072.1 | False | 7315 | mRNA | 0.49 | 29 | 51704037 | 51825745 |
XM_036950069.1 | False | 7731 | mRNA | 0.50 | 29 | 51704037 | 51872774 |
XM_036950079.1 | True | 3944 | mRNA | 0.55 | 23 | 51723958 | 51787751 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110494056 | got1a | coding | downstream | 37036 | 51663617 ~ 51667001 (-) |
optc | LOC106565102 | coding | downstream | 236737 | 51437399 ~ 51467300 (-) |
LOC110493206 | LOC106565103 | coding | downstream | 461165 | 51080114 ~ 51242872 (-) |
LOC110494054 | LOC106565105 | coding | downstream | 626692 | 51063244 ~ 51077345 (-) |
elf3 | LOC106565106 | coding | downstream | 672450 | 51026318 ~ 51031587 (-) |
LOC110494057 | LOC106565097 | coding | upstream | 1526 | 51874300 ~ 51882293 (-) |
pik3c2b | LOC106565096 | coding | upstream | 11427 | 51884201 ~ 51953114 (-) |
LOC110494065 | LOC106565089 | coding | upstream | 494852 | 52367626 ~ 52369842 (-) |
LOC110494069 | LOC106565086 | coding | upstream | 546980 | 52419754 ~ 52424083 (-) |
LOC110494074 | rrp9 | coding | upstream | 836194 | 52708968 ~ 52715179 (-) |
G1461489 | NA | non-coding | downstream | 53484 | 51650331 ~ 51650553 (-) |
G1461458 | NA | non-coding | downstream | 55771 | 51597176 ~ 51648266 (-) |
G1461457 | NA | non-coding | downstream | 61974 | 51606190 ~ 51642063 (-) |
G1460963 | NA | non-coding | downstream | 147819 | 51555945 ~ 51556218 (-) |
G1460769 | NA | non-coding | downstream | 305813 | 51397973 ~ 51398224 (-) |
G1461630 | NA | non-coding | upstream | 66394 | 51939168 ~ 51939405 (-) |
G1461719 | NA | non-coding | upstream | 194033 | 52066807 ~ 52071782 (-) |
G1461732 | nfasc | non-coding | upstream | 210104 | 52082878 ~ 52083364 (-) |
G1461749 | NA | non-coding | upstream | 258186 | 52130960 ~ 52131311 (-) |
G1461776 | NA | non-coding | upstream | 295032 | 52167806 ~ 52168032 (-) |
G1460539 | NA | other | downstream | 704633 | 50998754 ~ 50999404 (-) |
LOC110494046 | LOC106565111 | other | downstream | 828559 | 50862652 ~ 50875481 (-) |
G1460128 | NA | other | downstream | 943041 | 50754934 ~ 50760996 (-) |
slc25a34 | LOC106565132 | other | downstream | 1349287 | 50349819 ~ 50363084 (-) |
G1462356 | NA | other | upstream | 831359 | 52704133 ~ 52704688 (-) |
G1463760 | NA | other | upstream | 1905708 | 53778482 ~ 53780496 (-) |
G1464551 | NA | other | upstream | 2589897 | 54462671 ~ 54463702 (-) |
G1464933 | NA | other | upstream | 2799478 | 54672252 ~ 54673919 (-) |
G1464950 | ccdc36 | other | upstream | 2843330 | 54716104 ~ 54717490 (-) |