LOC110494061 (LOC106565309)


Basic Information

Item Value
gene id LOC110494061
gene name LOC106565309
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52274254 ~ 52280244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568754.2
GAAGTATAAATCAGCAAGAACACAGCACAGCTACTGTAGGAACTCTCCCTCTGTCACTGGTGGAGAAAGGTACATTGTTTCTAAGGATAACCGACTTGATTTCACAACACAATGGCCAGACTCACTGTGCTTGCAGGTCTGGGCCTTCTGCTGATGGTGCAGATTGCCGCCTCCACCAAACTGGTCTGCCACATGACCAACTGGGCCCAGTACCGCCCCAGCAGTGGGAAATTCACCCCTGAGAACATCGACCCCTTCCTCTGCACCCATGTGATCTACAGCCTGGCCACCATCAACAGCTTCAACCAGGTCGCCCCCATCGAGTGGAACGACGAAACCTTATACATCAGCCTCAACAACCTGAAGAACGTGAACCCAATGCTGAAGACTCTGCTTTCTGTCGGAGGCACAGTCAACGGACTCAGCCCATTCATCGGCATGGTGTCCAAACCTGAGAGCCGCCAGGCCTTCATCAAGTCAGCCATCAACTACCTGCGTTCCCACAACTTTGATGGTCTCAACCTGGCCTGGGAGTACCCCACTCAGAACGGCAGCCCCAACGGAGACAGGAAGAGGTTCACCGAGCTCGTCAGGGAGCTGCAGAAGGCCTTTATGGACGATGCCAAAGACACCAAGTTAACACAGCTGCTACTGTCTGCCAGTGTGGCTGCTTTACGGCCCACCATCAACTCCAGCTACGAGGTGGCCCAGATCGCCAGCTCTCTGGACTTCATCAACGTGATGACCTATGACTTTCACGGACACTGGGAGAGAGCAACCGGACACAACAGCCCCCTGTACCGCAGCAGACACGACTCAGTGACACACTACGACTTCAACGTCGACTCTGCCATCACCTACTGGCTGGACAACGGTGCCCCTGCTGAGAAGCTGTTGATGAGTTTCCCCACCTATGGCCGCACCTACCGTCTCACCACCACCAACACTGGCCTGGGAGCCCCCGCCAAAGGCCCTGCTGACGCCGGCCCATTCACCCGCGAAGCAGGATACTGGTCCTACTACGAGgtCTGCGCCTTCACCTCCAGCGCCACTGTTGAGTGGATTGATGAGCAGAAGGTCCCTTATGCTGTCCAGGGCAGCTCCTGGGTGGGCTATGACAACAAGGAGAGCTACGCTGCCAAGGTCCATTGGCTGAGGAACAAGAACCTGGGAGGAGCCTCCGTGTGGACGCTGGACATGGATGACTTCACTGGTGCTTTCTGTGCTGATGGTTCCTTCCCTCTTGTCAATCACCTCCGCAACTCTCTGGgCTTCGCCCCCAAGCCCACAACCACTCgggcccccaccaccacccctgaCCCCATCCTCAGCTTCTGCTCCGGACGCCCAGATGGCTTGTACGTCAACGTCATCGACAACACCACCTATTTCCAGTGTTTCCGTGGAAACACCTACCTGCACCGATGCCAGCCCGGCCTCGTCTATATTGATTCCTGCAAGTGCTGTGACTGGCCCTGAATGACTGCTAGCTATGTAGGACCAATTAGTTAGAATGCTATAACAACCTTCAATGACAACTAGCTGTAACGGCAATAACTTATCCTAGGATCTGATCCTGAACTGCAACTGGCAAAATGTTACAAAATATACtaattttcattttgtcattttcTATTTGTCGGGTTACTGTCTttctcaaataaaaaaaataccatgTAAGACTGAA

Function

NR:

description
acidic mammalian chitinase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568754.2 True 1687 mRNA 0.54 12 52274254 52280244

Neighbor

gene id symbol gene type direction distance location
LOC110494060 LOC106565094 coding upstream 263 52190599 ~ 52273991 (+)
LOC110494059 nfasc coding upstream 152276 51967039 ~ 52121978 (+)
csf1 csf1 coding upstream 633842 51601433 ~ 51640412 (+)
apobec2a LOC100196684 coding upstream 1211493 51052682 ~ 51062761 (+)
LOC110494047 btg2 coding upstream 1376810 50894903 ~ 50897444 (+)
LOC110494062 LOC106565093 coding downstream 10982 52291226 ~ 52298261 (+)
zc3h11a zc3h11a coding downstream 61813 52342057 ~ 52363993 (+)
LOC110494066 LOC106565091 coding downstream 83851 52364095 ~ 52368350 (+)
LOC118936244 LOC100301636 coding downstream 96921 52377165 ~ 52381124 (+)
LOC100301636 LOC100301636 coding downstream 108982 52389226 ~ 52393138 (+)
G1461331 NA non-coding upstream 97296 52176739 ~ 52176958 (+)
G1461302 NA non-coding upstream 143444 52130593 ~ 52130810 (+)
G1461299 NA non-coding upstream 147203 52126815 ~ 52127051 (+)
G1461175 NA non-coding upstream 161131 52111723 ~ 52113123 (+)
G1461292 NA non-coding upstream 164679 52109215 ~ 52109575 (+)
G1461440 NA non-coding downstream 125097 52405341 ~ 52405572 (+)
G1461938 NA non-coding downstream 134868 52415112 ~ 52415333 (+)
G1461948 LOC106565086 non-coding downstream 141924 52422168 ~ 52423010 (+)
G1462021 NA non-coding downstream 222931 52503175 ~ 52503874 (+)
G1462159 NA non-coding downstream 425079 52705323 ~ 52705583 (+)
G1460249 LOC106565103 other upstream 1183365 51080132 ~ 51137770 (+)
G1459769 NA other upstream 1497182 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 1838548 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 2090558 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 1893770 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 1976137 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 2191461 54471705 ~ 54474472 (+)
G1466124 NA other downstream 3716404 55996648 ~ 55998347 (+)
G1466131 NA other downstream 3735333 56015577 ~ 56016613 (+)

Expression


Co-expression Network