LOC110494062 (LOC106565093)


Basic Information

Item Value
gene id LOC110494062
gene name LOC106565093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52291226 ~ 52298261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568755.2
CCACCACTGGATAAACTATATAAAAAGCCAGACTTAACTTCTCATCACTGACGGTTTCATCGGTGAAGTTCCCACGGTCCAAGTATCATTGTTGAATAGTCAAGATGTCTAAGCTGACAATCTTAGCAGGCTTGTGCCTGGTGCTGTGCCAGTTTGGCGCTTCCACCTCAGTTTCCACCGCAGCTGCTGCTTCTCCCAAAATGGTGTGCTACTTCACCAACTGGTCTCAGTACAGACCAGACAAAGGGAAGTACAAGCCTGAGAATGTGGACGCCCACCTGTGCACTCACCTGATCTACGCTTTCTCCATCCTCAACCACCGCAATGAGCTGGTCACCTACGAGTGGAATGATGACGTCCTCTACAAGTCCTTCAACGCCTTGAAGACCAAGAACCCTCATCTTAAGACTCTGCTGGCCGTCGGAGGATGGAACTTTGGTTCTTCCCAGTTCTCCATCATGGTGAGTAATGCTGCCAACCGTCAGACATTCATCCAGTCGTCCATCAGCTTCATGAGAACCCATGGTTTTGACGGTCTGGATCTGGACTGGGAGTACCCCGGGGCCCGAGGGAGCCCCCCGGAGGACAAGAAGAGGTTCACTCTGCTCTGCCAGGAGCTAGTGGCAGCCTACGCAGCTGAGGCCAAGTCCACCGGTAATGCCCAGCTCATGCTGACCGCTGCCGTGTCCGCTGGAAAGGGAACCATCGATGCTGGATATGAGATTGCCGAGATTGCCAAGTCTCTGGACTTCATCAACGTGATGACCTACGACTTCCACGGAACTTGGGAGAGATTCACTGGACACAACAGCCCCCTGTATCGCGGTGCTCATGACGAGGGAGAGCTTATCTACTTCAACACTgacTACGCCATGAAGTACTGGAGAGACAATGGCACCCCAGTGGAGAAGCTGAACATGGGCTTCGCCACCTATGGTCGTACCTTCCGCCTGACATCATCTGACACCAGCGTTGGAGCACCAGCCAGTGGCCCTGCCTCCGCCGGGCCCTACACCCGTGAAGCTGGCTTCTGGGCCTACTATGAGaTCTGCACCTTCATAAATGGCGCAACAGTTGAGATGATTGCAGACCAGATGGTTCCCTATGCCTACAGGGGCAATGAGTGGGTTGGATTTGACTCCAGGCAGAGCTTTGAGACCAAGGTCCGCTACATGAAGGACAACAAGTTTGGCGGTGCCTTCGTGTGGGCCCTGGATCTTGATGACTTCGCCAACCAGTTCTGCGCTGAGGGCAACCACCCTCTGTTGGGACATCTGCGCAAACTTCTTGACATCGTACTACCCCCTCTGCCCCCTACCACCACCCCCAAACCTGGCTCAGTCACCACCACCCGCCCCACAACCACCGTCACCACCCACGCCCCTGGGACAGGTTTCTGCAACGGAAAGCCTGATGGCATCTACGCCAACCCAGACGACATCACCACCTTCTACATGTGCGCCCATGGCCTCACCCACCTCAAAACCTGCAGCAACGGCTCGGTCTTCGACCCCAGCTCCAAGATCTGCGTGTGGCCTTAAGCGCGTTGTGAGGAAGTAAGGGTGTGAATTAGCATTGCTAATGCCAACTTTGTATTTACCAACTTTAAATttgactgcactgcccctttaatttactttttgaaaataaatatttccACAATATGAGGTCAAAATAACACTAGGAAATGGTAAAGTGTTATGATAATGCCCTTCAGCGTACACTTGGAATTTTAGCCTGTTCAGATGGGATGAAGTTTTTGGTCCACAATTTGACATCACAATCTGATCTGATTAttctgaccaatgaccagtcatcttttatttgcatatgtatccTCCTCCTTGGGGTAAGTTGGGTAGGCTCTAGATTCTAGACCATAGAGGTTCTACTAAATTTGTATTTTAGTTTCTAACTGTATGGTCTTGATGCTCCTAACCAccaatcagggctgtgtatgtaaatatatttaaatgtGTATCAACACGCCCACATGACCAGACTGAGTATTTCAAATGGAAAAGGAGGCACAGGGAAACAATATATTTAGTTATTTTATTACTTATATTCATGAAAAACACAGTGATTTATTATACATCCAGTGAGGATttgaaaatgtaattaaaaagaCTGCATTAGGGATTTAAAGATGCTATATtaaactttttgggtgacccaaCAAATTCACATAGAACTGTGAGTTATAGATATGTCATGCTCatcgaaagcaagtctaagaagtggtagatctgttctatgtgtggtATTTCTATACTTCTGATGCGCAAGTTTAGTTTTTGAGTCTTTTaatttcggttttgtacaccagcttcatacagctgaaaatatatttcacaatggtttagatggtacaatgattctctacactatacttgcttgttttgtcacataaactgaaattaggcgaactattagaattttagcaatcaGGAAATGGTGGATCGATttttgcatagtgcatctttaagtgtTACTGTGGTGCTAAAACATGTTGTGTGGGAAGGGAAGAATGCTGAATGTAGACAGTAATTGAGATGCAATTAGTTGAGTCTCGCGCTTAGTTTTGTAGAAGTGAAAACTGTTTTGTTTTGAATGAGTTCAAAAAATAAAAGATTCTGCCTTA

Function

NR:

description
acidic mammalian chitinase-like

GO: NA

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568755.2 True 2644 mRNA 0.46 11 52291226 52298261

Neighbor

gene id symbol gene type direction distance location
LOC110494061 LOC106565309 coding upstream 10982 52274254 ~ 52280244 (+)
LOC110494060 LOC106565094 coding upstream 17235 52190599 ~ 52273991 (+)
LOC110494059 nfasc coding upstream 169248 51967039 ~ 52121978 (+)
csf1 csf1 coding upstream 650814 51601433 ~ 51640412 (+)
apobec2a LOC100196684 coding upstream 1228465 51052682 ~ 51062761 (+)
zc3h11a zc3h11a coding downstream 43796 52342057 ~ 52363993 (+)
LOC110494066 LOC106565091 coding downstream 65834 52364095 ~ 52368350 (+)
LOC118936244 LOC100301636 coding downstream 78904 52377165 ~ 52381124 (+)
LOC100301636 LOC100301636 coding downstream 90965 52389226 ~ 52393138 (+)
LOC110494068 LOC106565087 coding downstream 100294 52398555 ~ 52402423 (+)
G1461331 NA non-coding upstream 114268 52176739 ~ 52176958 (+)
G1461302 NA non-coding upstream 160416 52130593 ~ 52130810 (+)
G1461299 NA non-coding upstream 164175 52126815 ~ 52127051 (+)
G1461175 NA non-coding upstream 178103 52111723 ~ 52113123 (+)
G1461292 NA non-coding upstream 181651 52109215 ~ 52109575 (+)
G1461440 NA non-coding downstream 107080 52405341 ~ 52405572 (+)
G1461938 NA non-coding downstream 116851 52415112 ~ 52415333 (+)
G1461948 LOC106565086 non-coding downstream 123907 52422168 ~ 52423010 (+)
G1462021 NA non-coding downstream 204914 52503175 ~ 52503874 (+)
G1462159 NA non-coding downstream 407062 52705323 ~ 52705583 (+)
G1460249 LOC106565103 other upstream 1200337 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 1393782 50894903 ~ 50897444 (+)
G1459769 NA other upstream 1514154 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 1855520 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 2107530 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 1875753 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 1958120 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 2173444 54471705 ~ 54474472 (+)
G1466124 NA other downstream 3698387 55996648 ~ 55998347 (+)
G1466131 NA other downstream 3717316 56015577 ~ 56016613 (+)

Expression


Co-expression Network