LOC110494066 (LOC106565091)


Basic Information

Item Value
gene id LOC110494066
gene name LOC106565091
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52364095 ~ 52368350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568762.2
AAAACTGAGTGCCGTGGAGGTCATGTTTCAGTTCATTATGTCGAAGGTTCTCAAGCCTCTCCTTGGGGACACCCCAcaattttgttgtagccctgaactaaCTCAAGGGCTTGACTATTTGAATCCGGTGTGCTAGCTGTGGAATAGTTAAAATATATGGAATAGCTAGGATTTCTTGAGCGGTTTGAGAACCCTTACTAGACAAATCTGGAGAATTGCCCTATTTGATTTTATTACAGTTTTTCAATACACAGATGGTGCTCTTTAGTTCCGTCAGTGCTATCAGAGCGGAAACAAAGATCACAATCATCGTCACTTCCGTGAAACTAAACGTAAACAAAGATGGTGGATTGTGAAAATACTACTCACACAGAAAACAAAATGAAAAAATTGGAATTGTTGAATATATTTCTCACCGAGAAATTAACCACGGCTGCCAATGAGATATTTGGGGCTGTGAAGGGTACTATAGTTGAGTACCAGACAGAAATCGTTCGCTCCAAGGAGGAGAACAATCATCTCCGAAAGCTGCTGGATATCGCTGTTCAGCGCGTTCTACTTCAAACAGACTGTCATACTATCCATCTCACCGAAGATGCATCTTCACCTGAGCAGCAGCATCGTGAGCAGGAGTGGACCCCCGGTCTAGGCCAGGAGGACCCAGAGCCCAcacagattaaagaggaacaggagctcagaAACAGTCCAGAGGAAGAGCAGCTTCAAGGGCTGGAGTCTGAAACCGAAGGAGAATCCATATATACGCCTTCTTTTGTGAAAAGTAACTGTGATCAGGACCCACCTCCACCTTCACATCTTCCCCAAACTGTGAACAACAGAGAAGGAGACTCTTTAGCCAGAACCATATCTAATAATCATATCAAAATAGAGAATGAAGGAGAAGGCTACAGCACATCAGAACCAACCAGTGACTTACAGCACGTCTTCACCGTGAATTCAGACTGTCTTGCAGCTCGGAGTGAAAACAGTGCCCAACCCAATATCAACAATATAATTCAGAGAGGACTCTCAGAATATGAGGCCCCACAGCCACAGGCAACATATGAAAGAGAAAGTATTGGTCTACACATACATGTTAGAGACCAGAACACCACCAAGCTTCCTCAACAGAGATCCCCCTATCAAGCCCAAGGCATACAGAGAGTGTATCCTTGCCGGGAGTGTGGGAAGTGCTTCAATTTCTCTTGTCAGTTAGAAGTCCACATGCGATGGCACAGCAAAGAAAGACCATTCAGCTGCTCTGTGTGTCGAAAAAGCTTCACCACCATCAGCCTGTTGAGGAGACACCACCGcattcacactggagagaaaccctacCGCTGTCACATCTGTGGGAAATGTTTCAATCAGTCGGCTCACCTGAACACCCACTTTAAAATTCACCCAGGGGAGAGACCACACAGCTGGAAAATGGCTCAGTCAAAACGTTAACAGCAGAGACATCTACACTCAGAAGGGAGAGTAACATGTACATCTGGGCAGTAGAACTATTGTTCAGGATTTAAGACACTAGAAGAACCCGTGATTGATGTTTGAACAATGCATTACAATACATTGAGGACTGGTGCTGTTATTCTTTTGTAATTATATTAGATGCAGAGGGTAGAAAATCCATCTTATTCAGCCTAACTAGATgcaatcaatcaattaattagATCATCCTTATCTATTTCCCTTTAGGACTTGGACCTGACTGCTGGGCTGTATGACTAGCCTATTAGGGTCTTGCCACAGTTATCCTTATCCCTAATGATAATAATACATGGGACTTTAAGCACCTTTCAGAAACCATAAGAACACTGCACACCGAAGAGTATGAAACAAGACAATAAAATGAATAAAAGCTACTTATCTTAGGCTAGGGCTGAGTAAGGGTGAGCTAAGCTTAGGGGAATGCGAGACTAAACAAGTAGGCTTTGATATTGTTTTTGAAAATGGCGATGGAGTCTGAATTGCAGGTGGCTTGGGGGGGAGAGACTTCCAGAGTTTGGGGGCAGCGGTGCTAAATGCTCTttttttagcaaccaggaaatggcggagtgatttctacatagtgcatctttaacggTTTTAATAAATAATTGGTCTGTTTCAAGTCAGGATGACTATTTGTGCAATCTTCTACCACCAGGCAGCAGCAATATGTGTGGGTTTAGTATTATGTCAAGTGTGTACTGTGGTGGCGTCTTCTGTAGATAAGAATCTCACTGTTACACTATTCGTACTATTACCAAAAGTCCTACCCAATTTCATTTATAAAACGGCAAGGGAAAAAGCCTTTCCCAAAATGACCTTTGTTCAAAAACAAAAATGTCAACATCTGTTTTATTAAACTATTACATTTTGTGCAACACAGTCAAAATAGATTTGACATATTTCAATATTTCAACAAAGAGCCTCCTTCTCAAACCACACATGGAAGGTCTTTCAGTTCAAGcagtcacatacacattttcaaAACATGCAATTTGAATTAATCCAGTAACAGGTCTTTGTTAGACACACCACTCTGTGGCTCCCCACGATGTTATGCAAGTTCATGCATTCATTATTGTCTACCTTTTTCAACCTAAAGCAGTGACTTCTGCGATACAGTATGTGTATAATTCTAGATATCAGTTAGTACTTTTCAAATCTAGTTTAAACCGATACATTTTCCCCACGCATATCACGATTTCTCCGGTTTGTGAATCAAGCTCATATGCCTTCTAAGGGATCCCATCCGATTGAAGCGTTTGCTGCATTCATGGCATGGATGCGGTTTCTCCTCTAGGTGAGTCTTCATGTGCACTGTCAGGGCTTCACTCACAGCGAAGGCCTTGCCACATTCTTCACAGCGATGCGGTTTCAACCCTGTGTGACTTGTCATATGTGTGGTCAGGGATCTCTTCACAGGGAAGCCCTTTCCACAAACATGGCAACGATGCGGCTTCTCCTTTGTGTGTGTCCTCAGGTGCATCTGCAAGCTTCCTTTTCGACTGAAATGTTTACCGCAATCTTGACACTGAAATGGTTTCTCCCCAGTATGAATGACTT

Function

NR:

description
gastrula zinc finger protein XlCGF48.2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568762.2 True 3057 mRNA 0.43 2 52364095 52368350

Neighbor

gene id symbol gene type direction distance location
zc3h11a zc3h11a coding upstream 102 52342057 ~ 52363993 (+)
LOC110494062 LOC106565093 coding upstream 65834 52291226 ~ 52298261 (+)
LOC110494061 LOC106565309 coding upstream 83851 52274254 ~ 52280244 (+)
LOC110494060 LOC106565094 coding upstream 90104 52190599 ~ 52273991 (+)
LOC110494059 nfasc coding upstream 242117 51967039 ~ 52121978 (+)
LOC118936244 LOC100301636 coding downstream 8815 52377165 ~ 52381124 (+)
LOC100301636 LOC100301636 coding downstream 20876 52389226 ~ 52393138 (+)
LOC110494068 LOC106565087 coding downstream 30205 52398555 ~ 52402423 (+)
zgc:113307 LOC106565325 coding downstream 76365 52444715 ~ 52454863 (+)
LOC110494072 LOC106565326 coding downstream 125421 52493771 ~ 52499544 (+)
G1461331 NA non-coding upstream 187137 52176739 ~ 52176958 (+)
G1461302 NA non-coding upstream 233285 52130593 ~ 52130810 (+)
G1461299 NA non-coding upstream 237044 52126815 ~ 52127051 (+)
G1461175 NA non-coding upstream 250972 52111723 ~ 52113123 (+)
G1461292 NA non-coding upstream 254520 52109215 ~ 52109575 (+)
G1461440 NA non-coding downstream 36991 52405341 ~ 52405572 (+)
G1461938 NA non-coding downstream 46762 52415112 ~ 52415333 (+)
G1461948 LOC106565086 non-coding downstream 53818 52422168 ~ 52423010 (+)
G1462021 NA non-coding downstream 134825 52503175 ~ 52503874 (+)
G1462159 NA non-coding downstream 336973 52705323 ~ 52705583 (+)
G1460249 LOC106565103 other upstream 1273206 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 1466651 50894903 ~ 50897444 (+)
G1459769 NA other upstream 1587023 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 1928389 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 2180399 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 1805664 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 1888031 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 2103355 54471705 ~ 54474472 (+)
G1466124 NA other downstream 3628298 55996648 ~ 55998347 (+)
G1466131 NA other downstream 3647227 56015577 ~ 56016613 (+)

Expression


Co-expression Network